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- Prequips:FAQ (06:28, 21 June 2006)
- Ms/ms (11:49, 3 August 2006)
- Spectra assignment (11:55, 3 August 2006)
- Prequips:Wishlist (02:06, 8 August 2006)
- Prequips:Bugs (02:06, 8 August 2006)
- Debugging:CGI programs (06:19, 29 August 2006)
- Debugging:Working with boost::shared ptr (00:14, 30 August 2006)
- MS level 2 (00:26, 30 August 2006)
- Debugging:Understanding XSL-Generating Code in Perl (00:31, 30 August 2006)
- TPP:Files and Formats (04:31, 6 September 2006)
- TPP:Directory Layout (02:55, 13 December 2006)
- Prequips:Documentation (08:23, 19 December 2006)
- Prequips:Eclipse Setup (05:29, 28 December 2006)
- Developer: Boost CPP libraries (23:26, 13 March 2007)
- Software:XPRESS (05:29, 10 April 2007)
- Software:ASAPRatio (05:58, 10 April 2007)
- Software:SpecArray (06:06, 10 April 2007)
- Software:Cytoscape (07:13, 10 April 2007)
- Software:XLink (07:24, 10 April 2007)
- Formats:protXML (02:10, 10 May 2007)
- Formats:Overview (06:35, 10 May 2007)
- Software:Mascot2XML (02:42, 7 June 2007)
- TPP:Phenyx and the TPP (04:01, 21 June 2007)
- TPP:Mascot and the TPP (04:37, 30 June 2007)
- TPP:ProbID and the TPP (06:16, 7 July 2007)
- Software:Out2XML (17:57, 18 July 2007)
- Software:Petunia (01:39, 20 July 2007)
- Software:ProbID (01:52, 20 July 2007)
- TPP:Documentation (08:05, 12 September 2007)
- Software:RAP (05:55, 20 September 2007)
- Software:MsXML2Other (06:02, 20 September 2007)
- Software:PepXMLViewer (06:08, 20 September 2007)
- Software:Out2Summary (06:12, 20 September 2007)
- Software:SPE (06:23, 20 September 2007)
- Software:SubsetDB (06:25, 20 September 2007)
- Software:Tandem2XML (01:37, 25 September 2007)
- Software:Prequips:Inclusion List Builder (08:12, 3 October 2007)
- Software:PeptideSieve:Builld (02:00, 30 October 2007)
- Software:Pep3D (02:12, 12 January 2008)
- Software:mzBruker (02:44, 24 January 2008)
- Software:da2tpp (03:10, 24 January 2008)
- Software:CompassXport (03:11, 24 January 2008)
- Software:RAMP (04:08, 1 February 2008)
- Software:mzStar (01:03, 6 March 2008)
- TPP:Sequest and the TPP (21:16, 10 April 2008)
- Software:PeptideSieve:Build (09:00, 28 May 2008)
- Software:readmzXML (01:31, 17 July 2008)
- Software:msBID (02:02, 19 July 2008)
- Software:SBEAMS (02:06, 19 July 2008)
- Export questions discussion list (01:31, 28 August 2008)
- Software:Firegoose, Gaggle, and PIPE (01:25, 5 September 2008)
- Glyco-peptide TODO list (22:55, 23 September 2008)
- Software:Prequips (05:41, 24 October 2008)
- Installing and building TPP on Windows (02:16, 31 October 2008)
- Software:TIQAM (00:08, 11 November 2008)
- TPP:4.1 Release Notes (09:06, 11 November 2008)
- Alt NxST search strategy (06:26, 14 November 2008)
- NewFrontPage (02:54, 17 December 2008)
- Software:JRAP (02:40, 1 January 2009)
- Software:ProteinProphet (04:17, 10 January 2009)
- Terry's blog (02:53, 14 January 2009)
- Glyco-peptide (04:44, 17 January 2009)
- NewGlycoPage (04:49, 17 January 2009)
- Software:SuperHirn (22:24, 30 January 2009)
- Software:Corra (02:48, 12 February 2009)
- TPP:4.2.0 Release Notes (09:36, 19 February 2009)
- Link (01:59, 5 March 2009)
- Software:RemoteConvert (23:00, 9 March 2009)
- Bash/tcsh syntax differences (01:20, 12 March 2009)
- Software:TPP:EC2 (03:19, 21 March 2009)
- TPP:Getting the sourcecode for a windows build (05:30, 7 May 2009)
- PeptideAtlas software (07:18, 19 June 2009)
- Using SBEAMS (04:20, 24 June 2009)
- TPP testimonials (01:18, 7 July 2009)
- Mayu (08:21, 19 July 2009)
- Software:Mayu (00:22, 5 August 2009)
- TPP:4.2.1 Release Notes (03:35, 8 August 2009)
- TPP:4.3.0 Release Notes (03:39, 8 August 2009)
- Expert search and TPP usage (01:00, 25 August 2009)
- Recipe for generating proteotypic peptides for example database (04:18, 25 September 2009)
- Scheduling on regis cluster (02:36, 17 October 2009)
- Software:pkl2mzXML (00:34, 28 October 2009)
- SearchProteins (11:59, 17 December 2009)
- Protein identification terminology (12:12, 17 December 2009)
- Spectrast create.params (16:37, 15 January 2010)
- Spectrast.usermods (14:17, 19 January 2010)
- Custom digest site (00:02, 22 January 2010)
- PABST peptide examples (09:42, 11 February 2010)
- Raw MS file conversion (01:46, 18 March 2010)
- PABST (04:28, 2 April 2010)
- Software:PeptideSieve (01:16, 9 April 2010)
- Software:PeptideSieveRetrainingTurtorial (01:16, 9 April 2010)
- ComputationalPredictionofProteotypicPeptides (06:26, 14 April 2010)
- Msconvert Capabilities (06:37, 20 May 2010)
- Software:PeptideProphet (02:38, 25 May 2010)
- Processing glycopeptide data (06:06, 9 June 2010)
- Software:MzXML2Search (02:10, 9 July 2010)
- Software:TPP-MaRiMba (23:32, 15 July 2010)
- Software:PeptideAtlas (01:17, 11 August 2010)
- TPP:4.4.0 Release Notes (05:19, 17 August 2010)
- PeptideAtlas:Chromosomal coverage (01:45, 21 August 2010)
- Software:ReAdW (05:17, 28 October 2010)
- TPP:4.4.1 Release Notes (06:16, 30 October 2010)
- Formats:mzXML (23:46, 8 July 2011)
- TPP:4.5.0 SVN Log (05:19, 21 September 2011)
- TPPDev:Branching (03:19, 27 October 2011)
- TPPDev:ReleaseChecklist (05:07, 27 October 2011)
- TPP:4.5.1 Release Notes (08:48, 22 November 2011)
- PeptideSieveRetrainingTutorial (05:19, 22 December 2011)
- TPP WISB Demo2012 (08:19, 11 January 2012)
- TPP:4.5.1 SVN Log (02:36, 7 February 2012)
- TPP:4.5.2 SVN Log (02:36, 7 February 2012)
- TPP:4.5.2 Release Notes (04:29, 7 February 2012)
- Software:mzWiff (23:43, 30 April 2012)
- Software:trapper (23:47, 30 April 2012)
- Software:massWolf (23:48, 30 April 2012)
- TPP:4.6.0 SVN Log (04:57, 21 August 2012)
- TPP:4.5.0 Release Notes (05:19, 21 August 2012)
- TPP:4.6.0 Release Notes (09:05, 31 August 2012)
- TPP:X!Tandem and the TPP (05:31, 13 September 2012)
- TPP:4.6.1 SVN Log (23:34, 25 September 2012)
- TPP:4.6.1 Release Notes (08:01, 27 September 2012)
- Building Peptide Atlas (06:50, 30 October 2012)
- PeptideAtlas Pipeline Retool 2012/13 (13:36, 30 October 2012)
- Software:MZIdentML (05:48, 15 January 2013)
- Software:Tomcat (04:46, 31 January 2013)
- TPP:4.6.2 SVN Log (08:41, 7 February 2013)
- TPP AMI 4.6.2 README (07:49, 20 February 2013)
- Using mProphet at ISB (07:37, 2 March 2013)
- TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (16:45, 8 March 2013)
- TPP SEWW Demo2012 (06:56, 9 March 2013)
- TPP:Installing on Mac OSX (06:19, 1 May 2013)
- TPP:Developer Documentation (01:49, 10 July 2013)
- TPP:4.6.3 SVN Log (02:39, 23 July 2013)
- TPP:4.6.3 Release Notes (12:39, 25 July 2013)
- TPP AMI 4.6.3 README (04:25, 26 July 2013)
- TPP Tutorial v1 (02:55, 13 December 2013)
- TPP Tutorial v2 (02:56, 13 December 2013)
- TPP AMZTPP:PetuniaTutorial (03:55, 3 January 2014)
- TPP AMZTPP (04:01, 3 January 2014)
- TPP:4.7.0 SVN Log (06:57, 11 February 2014)
- TPP:4.7.0 Release Notes (07:40, 1 March 2014)
- TPP AMI 4.7.0 README (03:36, 21 March 2014)
- TPP AMI 4.7.1 README (04:39, 28 May 2014)
- TPP:4.7.1 Release Notes (00:43, 29 May 2014)
- TPP TWA (05:03, 30 July 2014)
- TPP Tutorials (05:34, 5 August 2014)
- TPP:Cloud (05:41, 5 August 2014)
- Respect your Results (03:27, 13 August 2014)
- TPP TWA:Tutorial (06:58, 30 September 2014)
- TPP:Supported Search Engines (04:46, 16 October 2014)
- TPP:Related Tools (04:46, 16 October 2014)
- TPP:4.7.1 SVN Log (02:34, 29 October 2014)
- TPP:4.6.2 Release Notes (06:39, 13 November 2014)
- TPP Tutorial (09:49, 21 November 2014)
- TPP:4.8.0 Release Notes (05:54, 22 November 2014)
- TPP:4.8.0 SVN Log (06:00, 22 November 2014)
- TPP AMI 4.8.0 README (08:30, 22 November 2014)
- TPP Amazon Machine Images (08:31, 22 November 2014)
- TPP:Building Windows-native binaries with Visual Studio 2005 (01:05, 17 December 2014)
- TPP:Building Windows-native binaries with Mingw (02:07, 17 December 2014)
- TPP:Installing on Ubuntu 7.04 (02:15, 17 December 2014)
- TPP:Installing on Ubuntu 8.10 (02:16, 17 December 2014)
- TPP 4.2.1: Installing on Ubuntu 9.04 (02:16, 17 December 2014)
- TPP 4.3.1: Installing on Ubuntu 10.04 (02:16, 17 December 2014)
- TPP 4.5.2: Installing on Ubuntu 10.04.3 (02:17, 17 December 2014)
- TPP:V5Tasks (03:39, 20 February 2015)
- TPP:Using Petunia (05:04, 17 March 2015)
- TPP Tandem search (05:19, 17 March 2015)
- TPP:Example data analysis (05:23, 17 March 2015)
- TPP:Windows Cygwin Installation (05:27, 17 March 2015)
- AMZTPP:FAQ (02:55, 13 May 2015)
- ReleasePlanning (02:19, 18 July 2015)
- Software:Libra (05:31, 18 September 2015)
- TPP:V5Feedback (06:45, 23 October 2015)
- Software:SWATHProphet (11:22, 9 January 2016)
- Software:Overview (11:33, 9 January 2016)
- TPP:5.0.0 Release Notes (04:51, 12 October 2016)
- TPP:5.0.0 SVN Log (05:01, 12 October 2016)
- Windows Installation Guide (05:36, 12 October 2016)
- Links on mindfulness, meditation, and Buddhism (03:45, 4 January 2017)
- TPP:NovorIntegration (10:56, 18 January 2017)
- TPP 5.x development: Installing on Ubuntu 16.04 (06:54, 14 February 2017)
- TPP 5.0.0: Installing on Ubuntu 16.04 (07:02, 14 February 2017)
- Terry's compbio links (04:05, 15 February 2017)
- GetProteinAPI (06:50, 17 August 2017)
- GetProteinsAPI (07:01, 17 August 2017)
- TPP:5.0 Installation (04:31, 20 October 2017)
- TPP:Authors and Contributors (04:34, 20 October 2017)
- Tutorial:StPeter1 (07:08, 24 October 2017)
- TPP:5.1.0 SVN Log (03:07, 4 November 2017)
- TPP:5.1 Installation (04:57, 4 November 2017)
- TPP:5.1.0 Release Notes (05:01, 4 November 2017)
- FetchDataset (09:58, 8 November 2017)
- GetTransitionsAPI (14:25, 19 December 2017)
- TPP 5.1.0: Installing on Ubuntu 16.04 LTS (05:49, 22 December 2017)
- Software:QualScore (08:44, 21 June 2018)
- Software:SpectraST (07:59, 14 August 2018)
- Spectrast.params (14:45, 19 December 2018)
- Msconvert Wine (03:39, 10 January 2019)
- TPP:5.2.0 SVN Log (01:48, 14 March 2019)
- TPP:5.2.0 Release Notes (14:57, 30 March 2019)
- TPP 5.2.0: Installing on Ubuntu 18.04 LTS (10:20, 29 April 2019)
- Software:StPeter (05:10, 5 November 2019)
- Software:DidIScanThat (05:18, 5 November 2019)
- TPP 6.0.0: Installing on Ubuntu 20.04 LTS (11:27, 7 August 2021)
- TPP:6.0.0 Release Notes (09:10, 12 August 2021)
- TPP:6.1.0 Release Notes (06:53, 3 June 2022)
- TPP 6.1.0: Installing on Ubuntu 20.04 LTS (21:54, 27 June 2022)
- TPP:6.2.0 Release Notes (00:22, 16 February 2023)
- TPP:5.2 Installation (14:09, 17 February 2023)
- TPP 6.2.0: Installing on Ubuntu 22.04 LTS (09:58, 18 February 2023)
- Running the TPP Singularity image (03:23, 22 February 2023)
- Running the TPP docker image (03:25, 22 February 2023)
- My new page (13:38, 30 March 2023)
- Citing the TPP (10:35, 13 December 2023)
- Formats:pepXML (14:18, 20 February 2024)
- Main Page (06:15, 30 March 2024)
- TPP:7.0.0 Release Notes (08:21, 30 March 2024)
- TPP:Frequently Asked Questions (08:28, 30 March 2024)
- Software:TPP (08:36, 30 March 2024)
- TPP:6.3.0 Release Notes (09:07, 30 March 2024)
- Linux Installation Guides (03:27, 17 April 2024)
- TPP 7.0.0: Installing on Ubuntu 22.04 LTS (04:44, 17 April 2024)