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  1. Prequips:FAQ (06:28, 21 June 2006)
  2. Ms/ms (11:49, 3 August 2006)
  3. Spectra assignment (11:55, 3 August 2006)
  4. Prequips:Wishlist (02:06, 8 August 2006)
  5. Prequips:Bugs (02:06, 8 August 2006)
  6. Debugging:CGI programs (06:19, 29 August 2006)
  7. Debugging:Working with boost::shared ptr (00:14, 30 August 2006)
  8. MS level 2 (00:26, 30 August 2006)
  9. Debugging:Understanding XSL-Generating Code in Perl (00:31, 30 August 2006)
  10. TPP:Files and Formats (04:31, 6 September 2006)
  11. TPP:Directory Layout (02:55, 13 December 2006)
  12. Prequips:Documentation (08:23, 19 December 2006)
  13. Prequips:Eclipse Setup (05:29, 28 December 2006)
  14. Developer: Boost CPP libraries (23:26, 13 March 2007)
  15. Software:XPRESS (05:29, 10 April 2007)
  16. Software:ASAPRatio (05:58, 10 April 2007)
  17. Software:SpecArray (06:06, 10 April 2007)
  18. Software:Cytoscape (07:13, 10 April 2007)
  19. Software:XLink (07:24, 10 April 2007)
  20. Formats:protXML (02:10, 10 May 2007)
  21. Formats:Overview (06:35, 10 May 2007)
  22. Software:Mascot2XML (02:42, 7 June 2007)
  23. TPP:Phenyx and the TPP (04:01, 21 June 2007)
  24. TPP:Mascot and the TPP (04:37, 30 June 2007)
  25. TPP:ProbID and the TPP (06:16, 7 July 2007)
  26. Software:Out2XML (17:57, 18 July 2007)
  27. Software:Petunia (01:39, 20 July 2007)
  28. Software:ProbID (01:52, 20 July 2007)
  29. TPP:Documentation (08:05, 12 September 2007)
  30. Software:RAP (05:55, 20 September 2007)
  31. Software:MsXML2Other (06:02, 20 September 2007)
  32. Software:PepXMLViewer (06:08, 20 September 2007)
  33. Software:Out2Summary (06:12, 20 September 2007)
  34. Software:SPE (06:23, 20 September 2007)
  35. Software:SubsetDB (06:25, 20 September 2007)
  36. Software:Tandem2XML (01:37, 25 September 2007)
  37. Software:Prequips:Inclusion List Builder (08:12, 3 October 2007)
  38. Software:PeptideSieve:Builld (02:00, 30 October 2007)
  39. Software:Pep3D (02:12, 12 January 2008)
  40. Software:mzBruker (02:44, 24 January 2008)
  41. Software:da2tpp (03:10, 24 January 2008)
  42. Software:CompassXport (03:11, 24 January 2008)
  43. Software:RAMP (04:08, 1 February 2008)
  44. Software:mzStar (01:03, 6 March 2008)
  45. TPP:Sequest and the TPP (21:16, 10 April 2008)
  46. Software:PeptideSieve:Build (09:00, 28 May 2008)
  47. Software:readmzXML (01:31, 17 July 2008)
  48. Software:msBID (02:02, 19 July 2008)
  49. Software:SBEAMS (02:06, 19 July 2008)
  50. Export questions discussion list (01:31, 28 August 2008)
  51. Software:Firegoose, Gaggle, and PIPE (01:25, 5 September 2008)
  52. Glyco-peptide TODO list (22:55, 23 September 2008)
  53. Software:Prequips (05:41, 24 October 2008)
  54. Installing and building TPP on Windows (02:16, 31 October 2008)
  55. Software:TIQAM (00:08, 11 November 2008)
  56. TPP:4.1 Release Notes (09:06, 11 November 2008)
  57. Alt NxST search strategy (06:26, 14 November 2008)
  58. NewFrontPage (02:54, 17 December 2008)
  59. Software:JRAP (02:40, 1 January 2009)
  60. Software:ProteinProphet (04:17, 10 January 2009)
  61. Terry's blog (02:53, 14 January 2009)
  62. Glyco-peptide (04:44, 17 January 2009)
  63. NewGlycoPage (04:49, 17 January 2009)
  64. Software:SuperHirn (22:24, 30 January 2009)
  65. Software:Corra (02:48, 12 February 2009)
  66. TPP:4.2.0 Release Notes (09:36, 19 February 2009)
  67. Link (01:59, 5 March 2009)
  68. Software:RemoteConvert (23:00, 9 March 2009)
  69. Bash/tcsh syntax differences (01:20, 12 March 2009)
  70. Software:TPP:EC2 (03:19, 21 March 2009)
  71. TPP:Getting the sourcecode for a windows build (05:30, 7 May 2009)
  72. PeptideAtlas software (07:18, 19 June 2009)
  73. Using SBEAMS (04:20, 24 June 2009)
  74. TPP testimonials (01:18, 7 July 2009)
  75. Mayu (08:21, 19 July 2009)
  76. Software:Mayu (00:22, 5 August 2009)
  77. TPP:4.2.1 Release Notes (03:35, 8 August 2009)
  78. TPP:4.3.0 Release Notes (03:39, 8 August 2009)
  79. Expert search and TPP usage (01:00, 25 August 2009)
  80. Recipe for generating proteotypic peptides for example database (04:18, 25 September 2009)
  81. Scheduling on regis cluster (02:36, 17 October 2009)
  82. Software:pkl2mzXML (00:34, 28 October 2009)
  83. SearchProteins (11:59, 17 December 2009)
  84. Protein identification terminology (12:12, 17 December 2009)
  85. Spectrast create.params (16:37, 15 January 2010)
  86. Spectrast.usermods (14:17, 19 January 2010)
  87. Custom digest site (00:02, 22 January 2010)
  88. PABST peptide examples (09:42, 11 February 2010)
  89. Raw MS file conversion (01:46, 18 March 2010)
  90. PABST (04:28, 2 April 2010)
  91. Software:PeptideSieve (01:16, 9 April 2010)
  92. Software:PeptideSieveRetrainingTurtorial (01:16, 9 April 2010)
  93. ComputationalPredictionofProteotypicPeptides (06:26, 14 April 2010)
  94. Msconvert Capabilities (06:37, 20 May 2010)
  95. Software:PeptideProphet (02:38, 25 May 2010)
  96. Processing glycopeptide data (06:06, 9 June 2010)
  97. Software:MzXML2Search (02:10, 9 July 2010)
  98. Software:TPP-MaRiMba (23:32, 15 July 2010)
  99. Software:PeptideAtlas (01:17, 11 August 2010)
  100. TPP:4.4.0 Release Notes (05:19, 17 August 2010)
  101. PeptideAtlas:Chromosomal coverage (01:45, 21 August 2010)
  102. Software:ReAdW (05:17, 28 October 2010)
  103. TPP:4.4.1 Release Notes (06:16, 30 October 2010)
  104. Formats:mzXML (23:46, 8 July 2011)
  105. TPP:4.5.0 SVN Log (05:19, 21 September 2011)
  106. TPPDev:Branching (03:19, 27 October 2011)
  107. TPPDev:ReleaseChecklist (05:07, 27 October 2011)
  108. TPP:4.5.1 Release Notes (08:48, 22 November 2011)
  109. PeptideSieveRetrainingTutorial (05:19, 22 December 2011)
  110. TPP WISB Demo2012 (08:19, 11 January 2012)
  111. TPP:4.5.1 SVN Log (02:36, 7 February 2012)
  112. TPP:4.5.2 SVN Log (02:36, 7 February 2012)
  113. TPP:4.5.2 Release Notes (04:29, 7 February 2012)
  114. Software:mzWiff (23:43, 30 April 2012)
  115. Software:trapper (23:47, 30 April 2012)
  116. Software:massWolf (23:48, 30 April 2012)
  117. TPP:4.6.0 SVN Log (04:57, 21 August 2012)
  118. TPP:4.5.0 Release Notes (05:19, 21 August 2012)
  119. TPP:4.6.0 Release Notes (09:05, 31 August 2012)
  120. TPP:X!Tandem and the TPP (05:31, 13 September 2012)
  121. TPP:4.6.1 SVN Log (23:34, 25 September 2012)
  122. TPP:4.6.1 Release Notes (08:01, 27 September 2012)
  123. Building Peptide Atlas (06:50, 30 October 2012)
  124. PeptideAtlas Pipeline Retool 2012/13 (13:36, 30 October 2012)
  125. Software:MZIdentML (05:48, 15 January 2013)
  126. Software:Tomcat (04:46, 31 January 2013)
  127. TPP:4.6.2 SVN Log (08:41, 7 February 2013)
  128. TPP AMI 4.6.2 README (07:49, 20 February 2013)
  129. Using mProphet at ISB (07:37, 2 March 2013)
  130. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (16:45, 8 March 2013)
  131. TPP SEWW Demo2012 (06:56, 9 March 2013)
  132. TPP:Installing on Mac OSX (06:19, 1 May 2013)
  133. TPP:Developer Documentation (01:49, 10 July 2013)
  134. TPP:4.6.3 SVN Log (02:39, 23 July 2013)
  135. TPP:4.6.3 Release Notes (12:39, 25 July 2013)
  136. TPP AMI 4.6.3 README (04:25, 26 July 2013)
  137. TPP Tutorial v1 (02:55, 13 December 2013)
  138. TPP Tutorial v2 (02:56, 13 December 2013)
  139. TPP AMZTPP:PetuniaTutorial (03:55, 3 January 2014)
  140. TPP AMZTPP (04:01, 3 January 2014)
  141. TPP:4.7.0 SVN Log (06:57, 11 February 2014)
  142. TPP:4.7.0 Release Notes (07:40, 1 March 2014)
  143. TPP AMI 4.7.0 README (03:36, 21 March 2014)
  144. TPP AMI 4.7.1 README (04:39, 28 May 2014)
  145. TPP:4.7.1 Release Notes (00:43, 29 May 2014)
  146. TPP TWA (05:03, 30 July 2014)
  147. TPP Tutorials (05:34, 5 August 2014)
  148. TPP:Cloud (05:41, 5 August 2014)
  149. Respect your Results (03:27, 13 August 2014)
  150. TPP TWA:Tutorial (06:58, 30 September 2014)
  151. TPP:Supported Search Engines (04:46, 16 October 2014)
  152. TPP:Related Tools (04:46, 16 October 2014)
  153. TPP:4.7.1 SVN Log (02:34, 29 October 2014)
  154. TPP:4.6.2 Release Notes (06:39, 13 November 2014)
  155. TPP Tutorial (09:49, 21 November 2014)
  156. TPP:4.8.0 Release Notes (05:54, 22 November 2014)
  157. TPP:4.8.0 SVN Log (06:00, 22 November 2014)
  158. TPP AMI 4.8.0 README (08:30, 22 November 2014)
  159. TPP Amazon Machine Images (08:31, 22 November 2014)
  160. TPP:Building Windows-native binaries with Visual Studio 2005 (01:05, 17 December 2014)
  161. TPP:Building Windows-native binaries with Mingw (02:07, 17 December 2014)
  162. TPP:Installing on Ubuntu 7.04 (02:15, 17 December 2014)
  163. TPP:Installing on Ubuntu 8.10 (02:16, 17 December 2014)
  164. TPP 4.2.1: Installing on Ubuntu 9.04 (02:16, 17 December 2014)
  165. TPP 4.3.1: Installing on Ubuntu 10.04 (02:16, 17 December 2014)
  166. TPP 4.5.2: Installing on Ubuntu 10.04.3 (02:17, 17 December 2014)
  167. TPP:V5Tasks (03:39, 20 February 2015)
  168. TPP:Using Petunia (05:04, 17 March 2015)
  169. TPP Tandem search (05:19, 17 March 2015)
  170. TPP:Example data analysis (05:23, 17 March 2015)
  171. TPP:Windows Cygwin Installation (05:27, 17 March 2015)
  172. AMZTPP:FAQ (02:55, 13 May 2015)
  173. ReleasePlanning (02:19, 18 July 2015)
  174. Software:Libra (05:31, 18 September 2015)
  175. TPP:V5Feedback (06:45, 23 October 2015)
  176. Software:SWATHProphet (11:22, 9 January 2016)
  177. Software:Overview (11:33, 9 January 2016)
  178. TPP:5.0.0 Release Notes (04:51, 12 October 2016)
  179. TPP:5.0.0 SVN Log (05:01, 12 October 2016)
  180. Windows Installation Guide (05:36, 12 October 2016)
  181. Links on mindfulness, meditation, and Buddhism (03:45, 4 January 2017)
  182. TPP:NovorIntegration (10:56, 18 January 2017)
  183. TPP 5.x development: Installing on Ubuntu 16.04 (06:54, 14 February 2017)
  184. TPP 5.0.0: Installing on Ubuntu 16.04 (07:02, 14 February 2017)
  185. Terry's compbio links (04:05, 15 February 2017)
  186. GetProteinAPI (06:50, 17 August 2017)
  187. GetProteinsAPI (07:01, 17 August 2017)
  188. TPP:5.0 Installation (04:31, 20 October 2017)
  189. TPP:Authors and Contributors (04:34, 20 October 2017)
  190. Tutorial:StPeter1 (07:08, 24 October 2017)
  191. TPP:5.1.0 SVN Log (03:07, 4 November 2017)
  192. TPP:5.1 Installation (04:57, 4 November 2017)
  193. TPP:5.1.0 Release Notes (05:01, 4 November 2017)
  194. FetchDataset (09:58, 8 November 2017)
  195. GetTransitionsAPI (14:25, 19 December 2017)
  196. TPP 5.1.0: Installing on Ubuntu 16.04 LTS (05:49, 22 December 2017)
  197. Software:QualScore (08:44, 21 June 2018)
  198. Software:SpectraST (07:59, 14 August 2018)
  199. Spectrast.params (14:45, 19 December 2018)
  200. Msconvert Wine (03:39, 10 January 2019)
  201. TPP:5.2.0 SVN Log (01:48, 14 March 2019)
  202. TPP:5.2.0 Release Notes (14:57, 30 March 2019)
  203. TPP 5.2.0: Installing on Ubuntu 18.04 LTS (10:20, 29 April 2019)
  204. Software:StPeter (05:10, 5 November 2019)
  205. Software:DidIScanThat (05:18, 5 November 2019)
  206. TPP 6.0.0: Installing on Ubuntu 20.04 LTS (11:27, 7 August 2021)
  207. TPP:6.0.0 Release Notes (09:10, 12 August 2021)
  208. TPP:6.1.0 Release Notes (06:53, 3 June 2022)
  209. TPP 6.1.0: Installing on Ubuntu 20.04 LTS (21:54, 27 June 2022)
  210. TPP:6.2.0 Release Notes (00:22, 16 February 2023)
  211. TPP:5.2 Installation (14:09, 17 February 2023)
  212. TPP 6.2.0: Installing on Ubuntu 22.04 LTS (09:58, 18 February 2023)
  213. Running the TPP Singularity image (03:23, 22 February 2023)
  214. Running the TPP docker image (03:25, 22 February 2023)
  215. My new page (13:38, 30 March 2023)
  216. Citing the TPP (10:35, 13 December 2023)
  217. Formats:pepXML (14:18, 20 February 2024)
  218. Main Page (06:15, 30 March 2024)
  219. TPP:7.0.0 Release Notes (08:21, 30 March 2024)
  220. TPP:Frequently Asked Questions (08:28, 30 March 2024)
  221. Software:TPP (08:36, 30 March 2024)
  222. TPP:6.3.0 Release Notes (09:07, 30 March 2024)
  223. Linux Installation Guides (03:27, 17 April 2024)
  224. TPP 7.0.0: Installing on Ubuntu 22.04 LTS (04:44, 17 April 2024)

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