TPP:4.6.2 Release Notes

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Trans-Proteomic Pipeline (TPP) software, release 4.6.2 is a maintenance release of TPP that contains several fixes to 4.6.1. The software is available for Windows as well as Linux (and unofficially) through OSX source from all the usual locations (please see the section below, "Getting the software"). Most users are recommended to use the Windows installer, which installs and configures the TPP and other required software (such as a web server). For advanced users who need to customize the TPP, or for those who run high-throughput experiments, you can download the source code. Again, most users don't need build from source, and should use the Windows installer.

Previous release notes are available at TPP:4.6.1_Release_Notes


New Features

  • No new features to report


  • No issues to report

Bug fixes

  • No issues to report


  • No miscellaneous issues to report

Known Issues

  • No known issues to report

Getting the TPP Software

  • Download the TPP version 4.6.2 native windows installer (TPP_Setup_v4_6_2.exe) from the Sashimi SourceForge project file release page:
  • Everyone is encouraged to read and contribute to our wiki, at
  • For guides to installing and using our software, please see our wiki:
  • For downloading the source code, please go to the following link:
 "" and find the 4.6.2 source code .tgz package;

or, check out the code directly from svn:

 "svn co"
 For building from source, please refer to the readme file in TPP/src as well as the wiki.

The TPP Team: Luis, David, Mike, Brian, and Joe plus all other developers who contributed to this release from the ISB. Thanks to developers and users from the TPP's user community who provided feedback and code contributions.


The SVN log of all changes since the previous release are available at TPP:4.6.2_SVN_Log.

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