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Getting the software

This software is part of the TPP distribution.

In a nutshell

A small application for the interrogation of MS/MS spectra from mzML files.

More detail

The software requires three parameters: a data file (mzML), a target mass (monoisotopic, neutral mass), and a retention time (in seconds). The application then proceeds to extract scan numbers for any MS/MS spectrum within a narrow retention time window that includes the target mass in its selection window. Optional parameters allow the user to specify charge states for the target mass and the width of the retention time window.


None provided. Typing the software name without parameters on the command line produces a usage statement.


  • Michael Hoopmann
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