Glyco-peptide TODO list

From SPCTools

This page shows project tasks and progress (Back to main Glyco-peptide project page)

Dave

• Email data producers [done]
• Organize Hamid Data [done]
• Interact Hamid Data [done]
• Organize Safia Data [done]

• re-search Safia Data [done]
• Interact Safia Data [done]
• Organize Yong Data [done]
• Interact Yong Data [done]
• Organize Kelly Data [done]
• Interact Kelly Data [done]
• re-write UniPep/Human GlycoPeptideAtlas export script using B. Wollscheid format [done]
• Enter sample information into PA [done]
• Create new Human Glyco build for PA [done]

(optional)

• Add RuthH data to mouse glyco atlas [defer]
• Export peptides; look for human orthologs [defer]

• Generate build [done]
• Load build (optional) [defer]
• Run export script [done]

• Send list to Bernd [done]

Eric

• Organize JWatts data [done]
• Search JWatts data [done]

Bernd W

• Generate surface protein list [done]
• Merge lists
• Filter master list

Jingchun

• Generate theoretical list from cancer biomarker candidates [done]

Paola

• Prioritize list
• Order peptides