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- Main Page (1,118,495 views)
- Software:TPP (546,293 views)
- TPP Tutorial v2 (532,513 views)
- TPP Tutorial v1 (500,927 views)
- Formats:mzXML (365,795 views)
- Software:SpectraST (358,456 views)
- TPP Tutorial (299,136 views)
- Building Peptide Atlas (290,192 views)
- TPP:Windows Cygwin Installation (230,629 views)
- TPP:Installing on Mac OSX (213,949 views)
- Software:ReAdW (205,938 views)
- Terry's compbio links (199,370 views)
- Msconvert Wine (196,625 views)
- Windows Installation Guide (183,138 views)
- ReleasePlanning (183,132 views)
- Msconvert Capabilities (164,440 views)
- TPP:Developer Documentation (158,632 views)
- TPP Tandem search (152,168 views)
- Software:SuperHirn (146,960 views)
- TPP:V5Feedback (119,253 views)
- TPP Amazon Machine Images (118,405 views)
- Software:Overview (113,725 views)
- TPP:4.5.1 Release Notes (109,994 views)
- Software:massWolf (109,686 views)
- Software:PeptideSieve (99,883 views)
- TPP:Using Petunia (95,732 views)
- TPP AMZTPP (94,148 views)
- TPP:Frequently Asked Questions (91,570 views)
- TPP:4.4.0 Release Notes (87,887 views)
- TPP SEWW Demo2012 (87,314 views)
- Formats:pepXML (85,209 views)
- Software:RemoteConvert (80,152 views)
- TPP:Cloud (78,449 views)
- PeptideSieveRetrainingTutorial (74,686 views)
- TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (74,113 views)
- TPP:X!Tandem and the TPP (72,671 views)
- TPP:Related Tools (71,880 views)
- Software:TIQAM (64,680 views)
- Software:mzStar (60,953 views)
- Software:ProteinProphet (60,879 views)
- TPP:Authors and Contributors (57,433 views)
- Software:PeptideProphet (56,789 views)
- TPP TWA:Tutorial (56,281 views)
- Expert search and TPP usage (56,123 views)
- Software:Libra (55,221 views)
- Software:mzWiff (53,617 views)
- PeptideAtlas:Chromosomal coverage (51,563 views)
- PABST peptide examples (48,496 views)
- Software:RAMP (48,345 views)
- TPP:4.8.0 Release Notes (48,118 views)
- TPP:4.7.0 Release Notes (48,073 views)
- Software:MzXML2Search (47,409 views)
- TPP:4.7.1 Release Notes (47,381 views)
- Software:Prequips:Inclusion List Builder (47,360 views)
- Software:ASAPRatio (46,449 views)
- Terry's blog (46,148 views)
- Prequips:Eclipse Setup (44,806 views)
- Software:readmzXML (44,587 views)
- Software:msBID (44,316 views)
- Software:Pep3D (43,818 views)
- TPP:4.6.2 Release Notes (43,606 views)
- Software:mzBruker (43,303 views)
- Software:trapper (42,425 views)
- Software:TPP-MaRiMba (40,592 views)
- Software:Firegoose, Gaggle, and PIPE (39,386 views)
- TPP:Documentation (39,067 views)
- TPP 4.5.2: Installing on Ubuntu 10.04.3 (37,943 views)
- TPP:4.5.0 Release Notes (37,131 views)
- Software:XPRESS (35,777 views)
- Spectrast.params (35,382 views)
- Running the TPP docker image (34,529 views)
- TPP:Example data analysis (33,599 views)
- TPP 5.2.0: Installing on Ubuntu 18.04 LTS (31,582 views)
- TPP:Supported Search Engines (31,488 views)
- TPP:4.6.3 Release Notes (30,979 views)
- Software:CompassXport (30,302 views)
- Software:Mayu (30,184 views)
- Software:ProbID (29,260 views)
- TPP 4.3.1: Installing on Ubuntu 10.04 (28,670 views)
- TPP:Building Windows-native binaries with Mingw (28,634 views)
- Developer: Boost CPP libraries (28,358 views)
- Software:Out2XML (28,266 views)
- TPP:4.6.0 Release Notes (28,016 views)
- Software:Tandem2XML (27,009 views)
- TPP:5.0.0 Release Notes (26,860 views)
- Software:Mascot2XML (26,643 views)
- Software:Prequips (26,085 views)
- TPP:5.1.0 Release Notes (25,942 views)
- Recipe for generating proteotypic peptides for example database (25,767 views)
- Software:QualScore (25,361 views)
- Software:JRAP (25,073 views)
- GetTransitionsAPI (25,072 views)
- Software:Petunia (25,053 views)
- TPP:Installing on Ubuntu 7.04 (24,949 views)
- Software:SBEAMS (24,312 views)
- Software:SWATHProphet (24,281 views)
- Software:SpecArray (24,125 views)
- Glyco-peptide TODO list (23,822 views)
- Software:Corra (23,175 views)
- PABST (22,974 views)