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1. Main Page (1,210,904 views)
2. Software:TPP (601,251 views)
3. TPP Tutorial v2 (580,569 views)
4. TPP Tutorial v1 (560,021 views)
5. Formats:mzXML (390,563 views)
6. Software:SpectraST (388,321 views)
7. Building Peptide Atlas (329,107 views)
8. TPP Tutorial (328,307 views)
9. TPP:Windows Cygwin Installation (262,031 views)
10. TPP:Installing on Mac OSX (241,167 views)
11. Terry's compbio links (240,196 views)
12. Msconvert Wine (225,471 views)
13. Software:ReAdW (222,782 views)
14. ReleasePlanning (218,746 views)
15. Windows Installation Guide (196,237 views)
16. Msconvert Capabilities (186,753 views)
17. TPP:Developer Documentation (177,934 views)
18. TPP Tandem search (176,167 views)
19. Software:SuperHirn (162,966 views)
20. TPP:V5Feedback (150,303 views)
21. TPP Amazon Machine Images (133,597 views)
22. Software:Overview (125,710 views)
23. Software:massWolf (120,890 views)
24. TPP:4.5.1 Release Notes (116,390 views)
25. Software:PeptideSieve (113,786 views)
26. TPP AMZTPP (112,532 views)
27. TPP:Frequently Asked Questions (106,623 views)
28. TPP SEWW Demo2012 (105,060 views)
29. TPP:Using Petunia (101,355 views)
30. TPP:4.4.0 Release Notes (101,198 views)
31. Formats:pepXML (95,267 views)
32. Software:RemoteConvert (92,548 views)
33. PeptideSieveRetrainingTutorial (90,731 views)
34. TPP:Cloud (89,889 views)
35. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (85,576 views)
36. TPP:Related Tools (80,665 views)
37. TPP:X!Tandem and the TPP (80,175 views)
38. Software:TIQAM (71,328 views)
39. Software:mzStar (65,973 views)
40. TPP TWA:Tutorial (65,917 views)
41. Software:ProteinProphet (65,825 views)
42. TPP:Authors and Contributors (64,614 views)
43. Expert search and TPP usage (64,044 views)
44. Software:PeptideProphet (61,264 views)
45. Software:Libra (60,192 views)
46. PeptideAtlas:Chromosomal coverage (58,824 views)
47. Software:mzWiff (58,205 views)
48. TPP:4.7.0 Release Notes (56,722 views)
49. TPP:4.8.0 Release Notes (56,106 views)
50. PABST peptide examples (54,677 views)

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