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1. Main Page (1,167,414 views)
2. Software:TPP (575,990 views)
3. TPP Tutorial v2 (559,656 views)
4. TPP Tutorial v1 (534,009 views)
5. Formats:mzXML (380,346 views)
6. Software:SpectraST (373,077 views)
7. TPP Tutorial (316,196 views)
8. Building Peptide Atlas (313,725 views)
9. TPP:Windows Cygwin Installation (247,502 views)
10. TPP:Installing on Mac OSX (230,973 views)
11. Terry's compbio links (226,387 views)
12. Software:ReAdW (215,323 views)
13. Msconvert Wine (211,715 views)
14. ReleasePlanning (200,326 views)
15. Windows Installation Guide (189,979 views)
16. Msconvert Capabilities (176,279 views)
17. TPP:Developer Documentation (169,661 views)
18. TPP Tandem search (167,431 views)
19. Software:SuperHirn (155,137 views)
20. TPP:V5Feedback (137,746 views)
21. TPP Amazon Machine Images (126,219 views)
22. Software:Overview (119,809 views)
23. Software:massWolf (115,007 views)
24. TPP:4.5.1 Release Notes (113,306 views)
25. Software:PeptideSieve (107,397 views)
26. TPP AMZTPP (103,740 views)
27. TPP:Frequently Asked Questions (100,471 views)
28. TPP:Using Petunia (99,237 views)
29. TPP SEWW Demo2012 (96,741 views)
30. TPP:4.4.0 Release Notes (94,420 views)
31. Formats:pepXML (91,437 views)
32. Software:RemoteConvert (86,108 views)
33. TPP:Cloud (85,221 views)
34. PeptideSieveRetrainingTutorial (84,807 views)
35. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (81,939 views)
36. TPP:X!Tandem and the TPP (77,662 views)
37. TPP:Related Tools (77,076 views)
38. Software:TIQAM (68,702 views)
39. Software:mzStar (63,812 views)
40. Software:ProteinProphet (63,806 views)
41. TPP TWA:Tutorial (61,903 views)
42. TPP:Authors and Contributors (61,510 views)
43. Expert search and TPP usage (61,133 views)
44. Software:PeptideProphet (59,333 views)
45. Software:Libra (58,295 views)
46. Software:mzWiff (56,140 views)
47. PeptideAtlas:Chromosomal coverage (55,451 views)
48. TPP:4.8.0 Release Notes (52,629 views)
49. TPP:4.7.0 Release Notes (52,473 views)
50. PABST peptide examples (52,043 views)

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