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1. Main Page (1,301,136 views)
2. Software:TPP (656,783 views)
3. TPP Tutorial v2 (638,102 views)
4. TPP Tutorial v1 (613,096 views)
5. Formats:mzXML (419,490 views)
6. Software:SpectraST (419,485 views)
7. Building Peptide Atlas (386,322 views)
8. TPP Tutorial (358,373 views)
9. TPP:Windows Cygwin Installation (299,687 views)
10. Terry's compbio links (286,272 views)
11. ReleasePlanning (272,490 views)
12. Msconvert Wine (264,547 views)
13. TPP:Installing on Mac OSX (262,895 views)
14. Software:ReAdW (236,346 views)
15. Windows Installation Guide (211,783 views)
16. Msconvert Capabilities (207,716 views)
17. TPP Tandem search (199,351 views)
18. TPP:Developer Documentation (198,895 views)
19. TPP:V5Feedback (190,137 views)
20. Software:SuperHirn (180,154 views)
21. TPP Amazon Machine Images (157,702 views)
22. Software:Overview (139,291 views)
23. TPP AMZTPP (130,506 views)
24. Software:massWolf (129,581 views)
25. Software:PeptideSieve (126,099 views)
26. TPP:4.5.1 Release Notes (123,852 views)
27. TPP SEWW Demo2012 (123,803 views)
28. TPP:Frequently Asked Questions (123,304 views)
29. TPP:4.4.0 Release Notes (116,670 views)
30. Software:RemoteConvert (107,234 views)
31. TPP:Using Petunia (106,563 views)
32. PeptideSieveRetrainingTutorial (106,384 views)
33. TPP:Cloud (104,099 views)
34. Formats:pepXML (103,786 views)
35. TPP:Related Tools (92,270 views)
36. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (91,134 views)
37. TPP:X!Tandem and the TPP (90,142 views)
38. TPP TWA:Tutorial (81,478 views)
39. Software:TIQAM (79,369 views)
40. TPP:Authors and Contributors (74,514 views)
41. Expert search and TPP usage (73,858 views)
42. Software:mzStar (72,323 views)
43. Software:ProteinProphet (70,677 views)
44. TPP:4.7.0 Release Notes (68,442 views)
45. Software:Libra (66,422 views)
46. TPP:4.8.0 Release Notes (65,682 views)
47. Running the TPP docker image (65,358 views)
48. PeptideAtlas:Chromosomal coverage (64,484 views)
49. Software:PeptideProphet (64,420 views)
50. Software:PepXMLViewer (64,176 views)

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