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1. Main Page (1,320,376 views)
2. Software:TPP (666,572 views)
3. TPP Tutorial v2 (649,746 views)
4. TPP Tutorial v1 (628,220 views)
5. Software:SpectraST (426,816 views)
6. Formats:mzXML (425,945 views)
7. Building Peptide Atlas (404,589 views)
8. TPP Tutorial (364,560 views)
9. TPP:Windows Cygwin Installation (310,274 views)
10. Terry's compbio links (296,400 views)
11. ReleasePlanning (285,867 views)
12. Msconvert Wine (272,016 views)
13. TPP:Installing on Mac OSX (270,645 views)
14. Software:ReAdW (239,410 views)
15. Windows Installation Guide (215,343 views)
16. Msconvert Capabilities (211,702 views)
17. TPP:Developer Documentation (205,029 views)
18. TPP Tandem search (203,871 views)
19. TPP:V5Feedback (199,530 views)
20. Software:SuperHirn (184,734 views)
21. TPP Amazon Machine Images (162,866 views)
22. Software:Overview (141,537 views)
23. TPP AMZTPP (136,135 views)
24. Software:massWolf (131,271 views)
25. Software:PeptideSieve (129,175 views)
26. TPP:Frequently Asked Questions (128,433 views)
27. TPP SEWW Demo2012 (128,430 views)
28. TPP:4.5.1 Release Notes (125,420 views)
29. TPP:4.4.0 Release Notes (121,464 views)
30. PeptideSieveRetrainingTutorial (111,249 views)
31. Software:RemoteConvert (109,037 views)
32. TPP:Using Petunia (107,815 views)
33. TPP:Cloud (107,224 views)
34. Formats:pepXML (105,398 views)
35. TPP:Related Tools (94,048 views)
36. TPP:X!Tandem and the TPP (93,463 views)
37. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (92,605 views)
38. TPP TWA:Tutorial (85,970 views)
39. Software:TIQAM (81,083 views)
40. TPP:Authors and Contributors (76,175 views)
41. Expert search and TPP usage (76,001 views)
42. Software:mzStar (74,053 views)
43. Software:ProteinProphet (71,985 views)
44. TPP:4.7.0 Release Notes (71,183 views)
45. Running the TPP docker image (70,125 views)
46. TPP:4.8.0 Release Notes (68,138 views)
47. Software:Libra (67,407 views)
48. Software:PepXMLViewer (67,024 views)
49. PeptideAtlas:Chromosomal coverage (66,529 views)
50. Terry's blog (65,949 views)

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