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1. Main Page (1,236,407 views)
2. Software:TPP (616,918 views)
3. TPP Tutorial v2 (597,195 views)
4. TPP Tutorial v1 (575,319 views)
5. Software:SpectraST (397,999 views)
6. Formats:mzXML (396,775 views)
7. Building Peptide Atlas (343,203 views)
8. TPP Tutorial (337,003 views)
9. TPP:Windows Cygwin Installation (272,435 views)
10. Terry's compbio links (254,941 views)
11. TPP:Installing on Mac OSX (245,181 views)
12. Msconvert Wine (235,528 views)
13. ReleasePlanning (234,756 views)
14. Software:ReAdW (226,519 views)
15. Windows Installation Guide (200,704 views)
16. Msconvert Capabilities (191,174 views)
17. TPP:Developer Documentation (183,263 views)
18. TPP Tandem search (182,923 views)
19. Software:SuperHirn (166,729 views)
20. TPP:V5Feedback (160,998 views)
21. TPP Amazon Machine Images (140,721 views)
22. Software:Overview (129,288 views)
23. Software:massWolf (123,170 views)
24. TPP:4.5.1 Release Notes (118,199 views)
25. TPP AMZTPP (116,634 views)
26. Software:PeptideSieve (116,217 views)
27. TPP:Frequently Asked Questions (110,080 views)
28. TPP SEWW Demo2012 (109,077 views)
29. TPP:4.4.0 Release Notes (105,383 views)
30. TPP:Using Petunia (102,774 views)
31. Formats:pepXML (97,449 views)
32. Software:RemoteConvert (96,194 views)
33. PeptideSieveRetrainingTutorial (94,017 views)
34. TPP:Cloud (93,997 views)
35. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (86,647 views)
36. TPP:Related Tools (83,829 views)
37. TPP:X!Tandem and the TPP (82,675 views)
38. Software:TIQAM (72,877 views)
39. TPP TWA:Tutorial (69,515 views)
40. Software:mzStar (67,777 views)
41. Software:ProteinProphet (67,038 views)
42. TPP:Authors and Contributors (66,832 views)
43. Expert search and TPP usage (66,044 views)
44. Software:PeptideProphet (62,217 views)
45. Software:Libra (61,796 views)
46. PeptideAtlas:Chromosomal coverage (59,924 views)
47. TPP:4.7.0 Release Notes (59,801 views)
48. Software:mzWiff (59,066 views)
49. TPP:4.8.0 Release Notes (58,580 views)
50. PABST peptide examples (56,568 views)

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