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- Software:Firegoose, Gaggle, and PIPE (01:25, 5 September 2008)
- Glyco-peptide TODO list (22:55, 23 September 2008)
- Software:Prequips (05:41, 24 October 2008)
- Installing and building TPP on Windows (02:16, 31 October 2008)
- Software:TIQAM (00:08, 11 November 2008)
- TPP:4.1 Release Notes (09:06, 11 November 2008)
- Alt NxST search strategy (06:26, 14 November 2008)
- NewFrontPage (02:54, 17 December 2008)
- Software:JRAP (02:40, 1 January 2009)
- Software:ProteinProphet (04:17, 10 January 2009)
- Terry's blog (02:53, 14 January 2009)
- Glyco-peptide (04:44, 17 January 2009)
- NewGlycoPage (04:49, 17 January 2009)
- Software:SuperHirn (22:24, 30 January 2009)
- Software:Corra (02:48, 12 February 2009)
- TPP:4.2.0 Release Notes (09:36, 19 February 2009)
- Link (01:59, 5 March 2009)
- Software:RemoteConvert (23:00, 9 March 2009)
- Bash/tcsh syntax differences (01:20, 12 March 2009)
- Software:TPP:EC2 (03:19, 21 March 2009)
- TPP:Getting the sourcecode for a windows build (05:30, 7 May 2009)
- PeptideAtlas software (07:18, 19 June 2009)
- Using SBEAMS (04:20, 24 June 2009)
- TPP testimonials (01:18, 7 July 2009)
- Mayu (08:21, 19 July 2009)
- Software:Mayu (00:22, 5 August 2009)
- TPP:4.2.1 Release Notes (03:35, 8 August 2009)
- TPP:4.3.0 Release Notes (03:39, 8 August 2009)
- Expert search and TPP usage (01:00, 25 August 2009)
- Recipe for generating proteotypic peptides for example database (04:18, 25 September 2009)
- Scheduling on regis cluster (02:36, 17 October 2009)
- Software:pkl2mzXML (00:34, 28 October 2009)
- SearchProteins (11:59, 17 December 2009)
- Protein identification terminology (12:12, 17 December 2009)
- Spectrast create.params (16:37, 15 January 2010)
- Spectrast.usermods (14:17, 19 January 2010)
- Custom digest site (00:02, 22 January 2010)
- PABST peptide examples (09:42, 11 February 2010)
- Raw MS file conversion (01:46, 18 March 2010)
- PABST (04:28, 2 April 2010)
- Software:PeptideSieve (01:16, 9 April 2010)
- Software:PeptideSieveRetrainingTurtorial (01:16, 9 April 2010)
- ComputationalPredictionofProteotypicPeptides (06:26, 14 April 2010)
- Msconvert Capabilities (06:37, 20 May 2010)
- Software:PeptideProphet (02:38, 25 May 2010)
- Processing glycopeptide data (06:06, 9 June 2010)
- Software:MzXML2Search (02:10, 9 July 2010)
- Software:TPP-MaRiMba (23:32, 15 July 2010)
- Software:PeptideAtlas (01:17, 11 August 2010)
- TPP:4.4.0 Release Notes (05:19, 17 August 2010)
- PeptideAtlas:Chromosomal coverage (01:45, 21 August 2010)
- Software:ReAdW (05:17, 28 October 2010)
- TPP:4.4.1 Release Notes (06:16, 30 October 2010)
- Formats:mzXML (23:46, 8 July 2011)
- TPP:4.5.0 SVN Log (05:19, 21 September 2011)
- TPPDev:Branching (03:19, 27 October 2011)
- TPPDev:ReleaseChecklist (05:07, 27 October 2011)
- TPP:4.5.1 Release Notes (08:48, 22 November 2011)
- PeptideSieveRetrainingTutorial (05:19, 22 December 2011)
- TPP WISB Demo2012 (08:19, 11 January 2012)
- TPP:4.5.1 SVN Log (02:36, 7 February 2012)
- TPP:4.5.2 SVN Log (02:36, 7 February 2012)
- TPP:4.5.2 Release Notes (04:29, 7 February 2012)
- Software:mzWiff (23:43, 30 April 2012)
- Software:trapper (23:47, 30 April 2012)
- Software:massWolf (23:48, 30 April 2012)
- TPP:4.6.0 SVN Log (04:57, 21 August 2012)
- TPP:4.5.0 Release Notes (05:19, 21 August 2012)
- TPP:4.6.0 Release Notes (09:05, 31 August 2012)
- TPP:X!Tandem and the TPP (05:31, 13 September 2012)
- TPP:4.6.1 SVN Log (23:34, 25 September 2012)
- TPP:4.6.1 Release Notes (08:01, 27 September 2012)
- Building Peptide Atlas (06:50, 30 October 2012)
- PeptideAtlas Pipeline Retool 2012/13 (13:36, 30 October 2012)
- Software:MZIdentML (05:48, 15 January 2013)
- Software:Tomcat (04:46, 31 January 2013)
- TPP:4.6.2 SVN Log (08:41, 7 February 2013)
- TPP AMI 4.6.2 README (07:49, 20 February 2013)
- Using mProphet at ISB (07:37, 2 March 2013)
- TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (16:45, 8 March 2013)
- TPP SEWW Demo2012 (06:56, 9 March 2013)
- TPP:Installing on Mac OSX (06:19, 1 May 2013)
- TPP:Developer Documentation (01:49, 10 July 2013)
- TPP:4.6.3 SVN Log (02:39, 23 July 2013)
- TPP:4.6.3 Release Notes (12:39, 25 July 2013)
- TPP AMI 4.6.3 README (04:25, 26 July 2013)
- TPP Tutorial v1 (02:55, 13 December 2013)
- TPP Tutorial v2 (02:56, 13 December 2013)
- TPP AMZTPP:PetuniaTutorial (03:55, 3 January 2014)
- TPP AMZTPP (04:01, 3 January 2014)
- TPP:4.7.0 SVN Log (06:57, 11 February 2014)
- TPP:4.7.0 Release Notes (07:40, 1 March 2014)
- TPP AMI 4.7.0 README (03:36, 21 March 2014)
- TPP AMI 4.7.1 README (04:39, 28 May 2014)
- TPP:4.7.1 Release Notes (00:43, 29 May 2014)
- TPP TWA (05:03, 30 July 2014)
- TPP Tutorials (05:34, 5 August 2014)
- TPP:Cloud (05:41, 5 August 2014)
- Respect your Results (03:27, 13 August 2014)
- TPP TWA:Tutorial (06:58, 30 September 2014)