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1. Main Page (1,301,164 views)
2. Software:TPP (656,797 views)
3. TPP Tutorial v2 (638,110 views)
4. TPP Tutorial v1 (613,109 views)
5. Formats:mzXML (419,499 views)
6. Software:SpectraST (419,497 views)
7. Building Peptide Atlas (386,358 views)
8. TPP Tutorial (358,379 views)
9. TPP:Windows Cygwin Installation (299,708 views)
10. Terry's compbio links (286,283 views)
11. ReleasePlanning (272,519 views)
12. Msconvert Wine (264,589 views)
13. TPP:Installing on Mac OSX (262,909 views)
14. Software:ReAdW (236,352 views)
15. Windows Installation Guide (211,798 views)
16. Msconvert Capabilities (207,721 views)
17. TPP Tandem search (199,362 views)
18. TPP:Developer Documentation (198,900 views)
19. TPP:V5Feedback (190,150 views)
20. Software:SuperHirn (180,169 views)
21. TPP Amazon Machine Images (157,707 views)
22. Software:Overview (139,292 views)
23. TPP AMZTPP (130,512 views)
24. Software:massWolf (129,582 views)
25. Software:PeptideSieve (126,101 views)
26. TPP:4.5.1 Release Notes (123,860 views)
27. TPP SEWW Demo2012 (123,806 views)
28. TPP:Frequently Asked Questions (123,315 views)
29. TPP:4.4.0 Release Notes (116,681 views)
30. Software:RemoteConvert (107,235 views)
31. TPP:Using Petunia (106,563 views)
32. PeptideSieveRetrainingTutorial (106,398 views)
33. TPP:Cloud (104,106 views)
34. Formats:pepXML (103,789 views)
35. TPP:Related Tools (92,273 views)
36. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (91,135 views)
37. TPP:X!Tandem and the TPP (90,148 views)
38. TPP TWA:Tutorial (81,483 views)
39. Software:TIQAM (79,371 views)
40. TPP:Authors and Contributors (74,516 views)
41. Expert search and TPP usage (73,859 views)
42. Software:mzStar (72,325 views)
43. Software:ProteinProphet (70,680 views)
44. TPP:4.7.0 Release Notes (68,448 views)
45. Software:Libra (66,422 views)
46. TPP:4.8.0 Release Notes (65,689 views)
47. Running the TPP docker image (65,364 views)
48. PeptideAtlas:Chromosomal coverage (64,485 views)
49. Software:PeptideProphet (64,421 views)
50. Software:PepXMLViewer (64,176 views)

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