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1. Main Page (1,236,881 views)
2. Software:TPP (616,969 views)
3. TPP Tutorial v2 (597,269 views)
4. TPP Tutorial v1 (575,413 views)
5. Software:SpectraST (398,021 views)
6. Formats:mzXML (396,804 views)
7. Building Peptide Atlas (343,301 views)
8. TPP Tutorial (337,035 views)
9. TPP:Windows Cygwin Installation (272,490 views)
10. Terry's compbio links (255,006 views)
11. TPP:Installing on Mac OSX (245,221 views)
12. Msconvert Wine (235,583 views)
13. ReleasePlanning (234,827 views)
14. Software:ReAdW (226,533 views)
15. Windows Installation Guide (200,722 views)
16. Msconvert Capabilities (191,199 views)
17. TPP:Developer Documentation (183,292 views)
18. TPP Tandem search (182,982 views)
19. Software:SuperHirn (166,816 views)
20. TPP:V5Feedback (161,034 views)
21. TPP Amazon Machine Images (140,755 views)
22. Software:Overview (129,440 views)
23. Software:massWolf (123,183 views)
24. TPP:4.5.1 Release Notes (118,243 views)
25. TPP AMZTPP (116,655 views)
26. Software:PeptideSieve (116,231 views)
27. TPP:Frequently Asked Questions (110,104 views)
28. TPP SEWW Demo2012 (109,139 views)
29. TPP:4.4.0 Release Notes (105,409 views)
30. TPP:Using Petunia (102,782 views)
31. Formats:pepXML (97,456 views)
32. Software:RemoteConvert (96,223 views)
33. PeptideSieveRetrainingTutorial (94,030 views)
34. TPP:Cloud (94,008 views)
35. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (86,649 views)
36. TPP:Related Tools (83,846 views)
37. TPP:X!Tandem and the TPP (82,686 views)
38. Software:TIQAM (72,882 views)
39. TPP TWA:Tutorial (69,532 views)
40. Software:mzStar (67,786 views)
41. Software:ProteinProphet (67,042 views)
42. TPP:Authors and Contributors (66,849 views)
43. Expert search and TPP usage (66,066 views)
44. Software:PeptideProphet (62,222 views)
45. Software:Libra (61,802 views)
46. PeptideAtlas:Chromosomal coverage (59,938 views)
47. TPP:4.7.0 Release Notes (59,823 views)
48. Software:mzWiff (59,070 views)
49. TPP:4.8.0 Release Notes (58,599 views)
50. PABST peptide examples (56,581 views)

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