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1. Main Page (1,211,407 views)
2. Software:TPP (601,854 views)
3. TPP Tutorial v2 (581,150 views)
4. TPP Tutorial v1 (560,127 views)
5. Formats:mzXML (390,617 views)
6. Software:SpectraST (388,568 views)
7. Building Peptide Atlas (329,133 views)
8. TPP Tutorial (328,593 views)
9. TPP:Windows Cygwin Installation (262,059 views)
10. TPP:Installing on Mac OSX (241,171 views)
11. Terry's compbio links (240,317 views)
12. Msconvert Wine (225,591 views)
13. Software:ReAdW (222,935 views)
14. ReleasePlanning (218,762 views)
15. Windows Installation Guide (196,292 views)
16. Msconvert Capabilities (186,861 views)
17. TPP:Developer Documentation (178,036 views)
18. TPP Tandem search (176,181 views)
19. Software:SuperHirn (163,191 views)
20. TPP:V5Feedback (150,494 views)
21. TPP Amazon Machine Images (133,607 views)
22. Software:Overview (125,823 views)
23. Software:massWolf (121,002 views)
24. TPP:4.5.1 Release Notes (116,397 views)
25. Software:PeptideSieve (113,800 views)
26. TPP AMZTPP (112,541 views)
27. TPP:Frequently Asked Questions (106,721 views)
28. TPP SEWW Demo2012 (105,073 views)
29. TPP:Using Petunia (101,362 views)
30. TPP:4.4.0 Release Notes (101,213 views)
31. Formats:pepXML (95,381 views)
32. Software:RemoteConvert (92,554 views)
33. PeptideSieveRetrainingTutorial (90,753 views)
34. TPP:Cloud (89,906 views)
35. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (85,579 views)
36. TPP:Related Tools (80,683 views)
37. TPP:X!Tandem and the TPP (80,293 views)
38. Software:TIQAM (71,363 views)
39. Software:mzStar (65,995 views)
40. TPP TWA:Tutorial (65,923 views)
41. Software:ProteinProphet (65,886 views)
42. TPP:Authors and Contributors (64,621 views)
43. Expert search and TPP usage (64,054 views)
44. Software:PeptideProphet (61,285 views)
45. Software:Libra (60,305 views)
46. PeptideAtlas:Chromosomal coverage (58,847 views)
47. Software:mzWiff (58,246 views)
48. TPP:4.7.0 Release Notes (56,728 views)
49. TPP:4.8.0 Release Notes (56,110 views)
50. PABST peptide examples (54,691 views)

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