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1. Main Page (1,258,084 views)
2. Software:TPP (628,173 views)
3. TPP Tutorial v2 (610,018 views)
4. TPP Tutorial v1 (583,886 views)
5. Software:SpectraST (404,394 views)
6. Formats:mzXML (404,280 views)
7. Building Peptide Atlas (361,774 views)
8. TPP Tutorial (343,846 views)
9. TPP:Windows Cygwin Installation (280,664 views)
10. Terry's compbio links (266,752 views)
11. ReleasePlanning (250,264 views)
12. TPP:Installing on Mac OSX (249,339 views)
13. Msconvert Wine (246,712 views)
14. Software:ReAdW (229,473 views)
15. Windows Installation Guide (204,317 views)
16. Msconvert Capabilities (195,163 views)
17. TPP Tandem search (187,554 views)
18. TPP:Developer Documentation (187,135 views)
19. Software:SuperHirn (170,632 views)
20. TPP:V5Feedback (168,715 views)
21. TPP Amazon Machine Images (146,698 views)
22. Software:Overview (132,006 views)
23. Software:massWolf (125,047 views)
24. TPP:4.5.1 Release Notes (119,891 views)
25. TPP AMZTPP (119,770 views)
26. Software:PeptideSieve (118,823 views)
27. TPP:Frequently Asked Questions (112,958 views)
28. TPP SEWW Demo2012 (112,879 views)
29. TPP:4.4.0 Release Notes (109,032 views)
30. TPP:Using Petunia (103,966 views)
31. Software:RemoteConvert (100,401 views)
32. Formats:pepXML (99,471 views)
33. PeptideSieveRetrainingTutorial (98,433 views)
34. TPP:Cloud (96,730 views)
35. TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (87,717 views)
36. TPP:Related Tools (86,262 views)
37. TPP:X!Tandem and the TPP (84,462 views)
38. Software:TIQAM (74,648 views)
39. TPP TWA:Tutorial (72,895 views)
40. Expert search and TPP usage (69,194 views)
41. TPP:Authors and Contributors (68,962 views)
42. Software:mzStar (68,957 views)
43. Software:ProteinProphet (68,239 views)
44. Software:Libra (63,037 views)
45. Software:PeptideProphet (62,940 views)
46. TPP:4.7.0 Release Notes (62,679 views)
47. PeptideAtlas:Chromosomal coverage (61,661 views)
48. TPP:4.8.0 Release Notes (60,765 views)
49. Software:mzWiff (60,125 views)
50. PABST peptide examples (58,450 views)

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