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- Software:TPP
- Software:TPP-MaRiMba
- Software:TPP:EC2
- Software:Tandem2XML
- Software:Tomcat
- Software:XLink
- Software:XPRESS
- Software:da2tpp
- Software:massWolf
- Software:msBID
- Software:mzBruker
- Software:mzStar
- Software:mzWiff
- Software:pkl2mzXML
- Software:readmzXML
- Software:trapper
- Spectra assignment
- Spectrast.params
- Spectrast.usermods
- Spectrast create.params
- TPP:4.1 Release Notes
- TPP:4.2.0 Release Notes
- TPP:4.2.1 Release Notes
- TPP:4.3.0 Release Notes
- TPP:4.4.0 Release Notes
- TPP:4.4.1 Release Notes
- TPP:4.5.0 Release Notes
- TPP:4.5.0 SVN Log
- TPP:4.5.1 Release Notes
- TPP:4.5.1 SVN Log
- TPP:4.5.2 Release Notes
- TPP:4.5.2 SVN Log
- TPP:4.6.0 Release Notes
- TPP:4.6.0 SVN Log
- TPP:4.6.1 Release Notes
- TPP:4.6.1 SVN Log
- TPP:4.6.2 Release Notes
- TPP:4.6.2 SVN Log
- TPP:4.6.3 Release Notes
- TPP:4.6.3 SVN Log
- TPP:4.7.0 Release Notes
- TPP:4.7.0 SVN Log
- TPP:4.7.1 Release Notes
- TPP:4.7.1 SVN Log
- TPP:4.8.0 Release Notes
- TPP:4.8.0 SVN Log
- TPP:5.0.0 Release Notes
- TPP:5.0.0 SVN Log
- TPP:5.0 Installation
- TPP:5.1.0 Release Notes
- TPP:5.1.0 SVN Log
- TPP:5.1 Installation
- TPP:5.2.0 Release Notes
- TPP:5.2.0 SVN Log
- TPP:5.2 Installation
- TPP:6.0.0 Release Notes
- TPP:6.1.0 Release Notes
- TPP:6.2.0 Release Notes
- TPP:6.3.0 Release Notes
- TPP:7.0.0 Release Notes
- TPP:Authors and Contributors
- TPP:Building Windows-native binaries with Mingw
- TPP:Building Windows-native binaries with Visual Studio 2005
- TPP:Cloud
- TPP:Developer Documentation
- TPP:Directory Layout
- TPP:Documentation
- TPP:Example data analysis
- TPP:Files and Formats
- TPP:Frequently Asked Questions
- TPP:Getting the sourcecode for a windows build
- TPP:Installing on Mac OSX
- TPP:Installing on Ubuntu 7.04
- TPP:Installing on Ubuntu 8.10
- TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4
- TPP:Mascot and the TPP
- TPP:NovorIntegration
- TPP:Phenyx and the TPP
- TPP:ProbID and the TPP
- TPP:Related Tools
- TPP:Sequest and the TPP
- TPP:Supported Search Engines
- TPP:Using Petunia
- TPP:V5Feedback
- TPP:V5Tasks
- TPP:Windows Cygwin Installation
- TPP:X!Tandem and the TPP
- TPPDev:Branching
- TPPDev:ReleaseChecklist
- TPP 4.2.1: Installing on Ubuntu 9.04
- TPP 4.3.1: Installing on Ubuntu 10.04
- TPP 4.5.2: Installing on Ubuntu 10.04.3
- TPP 5.0.0: Installing on Ubuntu 16.04
- TPP 5.1.0: Installing on Ubuntu 16.04 LTS
- TPP 5.2.0: Installing on Ubuntu 18.04 LTS
- TPP 5.x development: Installing on Ubuntu 16.04
- TPP 6.0.0: Installing on Ubuntu 20.04 LTS
- TPP 6.1.0: Installing on Ubuntu 20.04 LTS
- TPP 6.2.0: Installing on Ubuntu 22.04 LTS
- TPP 7.0.0: Installing on Ubuntu 22.04 LTS