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  1. TPP:V5Feedback (11460 bytes)
    154: * <s>README opens poorly in Notepad (needs DOS line endings)</s>
    161: ... about security and the params() function. If so note the line #. I've gone through tpp_gui.pl trying ...
  2. Prequips:Eclipse Setup (5641 bytes)
    20: ...t the latest version of the feature and install. (NOTE, that had to install EMF manually
  3. Developer: Boost CPP libraries (1820 bytes)
    38: Note, this takes a *very* long time.
  4. TPP:Developer Documentation (23931 bytes)
    80: ...gwin build, the following is for ''Linux only''. Note that we distribute precompiled binaries in a comp...
    197: ...tructions are geared towards command-line usage. Note that the web-base GUI is a very convenient way to...
  5. Debugging:Understanding XSL-Generating Code in Perl (1339 bytes)
    10: ...ame}" might look like a perl-subsituted variable, note the single-quotes that contain it. This is a var...
  6. TPP:Windows Cygwin Installation (7499 bytes)
    14: ....exe TPP_Cygwin_Setup.exe installation program]. Note, you'll only need to download this once. When we...
    15: ...tep, until the installation is completed. Please note: '''cygwin installation directory must be C:\cygw...
    22: ...nstallation will install cygwin to c:\cygwin.<br/>Note: If your Windows OS is installed on a drive lette...
    30: '''Note: It is usually not necessary manually start the w...
    66: ...pgrading, you don't have to do anything special. Note, you do not have to re-download the cygwin setup ...
  7. Software:msBID (1414 bytes)
    2: (Please note, msBID evolved from the older MSAnalyzer project....
    22: ==Notes==
  8. Software:SBEAMS (2104 bytes)
    17: ...er.org/software/sbeams.installnotes sbeams.installnotes] - Installation Instructions
    23: .../www.sbeams.org/download/ SBEAMS Download Page] ''Note: You might find a newer version of this software ...
  9. TPP:Frequently Asked Questions (5647 bytes)
    13: ...ows shell), and thus can be scripted as desired. Note that many of the programs have many options, and ...
    68: ...cessible through any standard ftp client. Please note that you will '''not''' see your file after uploa...
  10. TPP:7.0.0 Release Notes (6884 bytes)
    1: = TPP 7.1.0 ALBEDO Release Notes =
    2: ...center.org/wiki/index.php?title=TPP:7.1.0_Release_Notes
    4: = TPP 7.0.0 ARAFEL Release Notes =
    25: ...lude support for all HDF formats (MZ5 and mzMLb). Note that mzMLb.gz is not yet supported.
  11. TPP:Installing on Mac OSX (12870 bytes)
    2: ''Please Note: '''The TPP is not currently officially supported...
    5: These notes were kindly prepared by Ulrich auf dem Keller of...
    29: Important note: a recent X11 update from Apple may have erased p...
    50: ...3 (http://www.phpmac.com/articles.php?view=214) (note: TPP most likely also works with built-in Apache ...
    54: '''Note:''' Mac OS X 10.5 comes with Apache2, this step c...
  12. Software:TPP (8915 bytes)
    45: '''NOTE:''' These advanced topics are for developers. Wi...
    52: '''Please Note:''' The TPP 7.0.0 is officially supported on Mac ...
  13. TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11616 bytes)
    3: | Note that this recipe will likely not be exactly appli...
    13: First some general notes
    113: NOTE: If you have more than one version of Perl instal...
    128: NOTE: If you are installing TPP on a cloud-based syste...
    166: ...http://40.83.177.49:10401/tpp/cgi-bin/tpp_gui.pl. Note that the above installation assumes installation ...
  14. Software:SpecArray (1001 bytes)
    8: ...D: Generate 2D gel type images from LC-MS data (''Note: Pep3D is also integrated into the [[Software:TPP...
  15. Software:ReAdW (1604 bytes)
    8: '''Note:''' This program is no longer supported. Users a...
  16. Software:mzStar (1909 bytes)
    4: =='''Important note: mzStar retired in favor of mzWiff'''==
    8: =='''Important note: Centroiding bug'''==
  17. TPP:Example data analysis (2562 bytes)
    1: ==Note==
  18. TPP:Using Petunia (4157 bytes)
    24: ''Note: if using a removable or network drive, you will ...
    33: *** Please make note of the forward slashes and case-sensitivity when ...
  19. Software:PeptideSieve (6357 bytes)
    3: '''Important Note:'''
    8: ...tently observed in proteomics experiments. We denote these consistently observed peptides to be proteo...
    13: ... each peptide is proteotypic. It is important to note that the predictors are specific for particular e...
  20. Software:massWolf (1763 bytes)
    20: ...ge] at the Sashimi SourceForge project. '''Please note: you must select the appropriate massWolf downloa...

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