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- Formats:mzXML (9722 bytes)
1: ...ts from most vendors can be converted to the open mzXML format.
5: ... [http://sashimi.sourceforge.net/schema_revision/ mzXML schema].
15: ...t acquisition software !! raw file type !! raw-to-mzXML converter !! SPC maintained? !! converter status/...
27: ...ed in mzXML; charge state info is not recorded in mzXML || [http://tools.proteomecenter.org/T2DE.php link...
37: ! format !! original use !! text-to-mzXML converter !! SPC maintained? !! converter status/...
Page text matches
- Main Page (6445 bytes)
14: ...mats:Overview|SPC open proteomics data formats]]: mzXML, pepXML, protXML==
15: ...loped open formats, which include [[Formats:mzXML|mzXML]], [[Formats:pepXML|pepXML]], and [[Formats:protX... - Software:Prequips (1386 bytes)
5: ...ence information. Currently data can be read from mzXML, pepXML, Bioworks (tabular), and protXML files. - Prequips:FAQ (1189 bytes)
20: == How do I load an mzXML File? ==
26: # Select '''mzXML Provider'''.
27: # Click on '''Browse ...''' to chose an mzXML file.
32: # Prequips currently only supports mzXML 2.0 and mzXML 2.1.
33: # It's recommended to move mzXML files to the local hard disk and load them from t... - Software:Prequips:Inclusion List Builder (3897 bytes)
32: ...XML file in centroid mode for the mapping runs, 1 mzXML file in centroid mode for the inclusion list runs... - TPP:Developer Documentation (23931 bytes)
199: ====Conversion of raw spectroscopy data to mzXML format====
208: In directory with summary.html and summary.mzXML (as well as the SEQUEST results .tgz or subdirect...
212: In the directory with summary.dat and summary.mzXML, type:
249: ===Converters to mzXML===
262: ...ALDI mode: do not include spectrum spot number in mzXML file name - Software:Overview (3074 bytes)
9: ...ut2Summary|Out2Summary]], [[Software:MzXML2Search|MzXML2Search]], [[Software:MsXML2Other|MsXML2Other]],
10: [[Software:readmzXML|readmzXML]], [[Software:mzStar|mzStar]]
17: ===raw MS / MS2 to mzXML converters===
18: Please see the [[Formats:mzXML|mzXML]] page for info on ReAdW (Thermo), mzStar (ABI/MD...
62: ...Wolf|massWolf (wolf.exe)]]: Micromass MassLynx to mzXML converter - TPP:Files and Formats (299 bytes)
3: ;mzXML: interchange of MS/MS-level data; ISB-developed - Software:TPP (8915 bytes)
17: ...s.proteomecenter.org/wiki/index.php?title=Formats:mzXML]]
90: ===Input Processing: mzXML Tools===
91: [[Software:readmzXML|readmzXML]]: mzML/mzXML parser based on RAMP
93: [[Software:MzXML2Search|MzXML2Search]]: Converts mzXML files to SEQUEST dta, MASCOT mgf, and Micromass p...
95: ...ware:mzStar|mzStar]]: SCIEX/ABI Analyst format to mzXML converter - Software:SpecArray (1001 bytes)
9: ... mzxml2dat: Denoise and centroidize LC-MS data in mzXML file format and convert them into binary file for... - Software:ReAdW (1604 bytes)
1: '''ReAdW: Thermo Xcalibur .raw files to mzXML converter'''
6: ...ative acquisition (.RAW) files to [[Formats:mzXML|mzXML]]. The program '''requires''' the XRawfile librar... - Software:mzStar (1909 bytes)
9: ...been discovered in the Analyst (ABI/MDS Sciex) to mzXML converter, mzStar. This has resulted in major da...
14: ...lyst (.WIFF) format MS/MS data to [[Formats:mzXML|mzXML]] converter. '''(RETIRED)'''
17: ... SCIEX/ABI Q-STAR instrument into [[Formats:mzXML|mzXML]] format. This application is based on a VB
30: ...i/tags/release_3-4-1/trans_proteomic_pipeline/src/mzXML/converters/mzStar/] - TPP:Example data analysis (2562 bytes)
20: ... tool generates an HTML summary for every MS run (mzXML) file that is searched. The HTML search results ... - Software:readmzXML (170 bytes)
2: A simple C application based on RAMP to parse mzXML files. - Software:massWolf (1763 bytes)
1: '''massWolf: Waters MassLynx .raw directories to mzXML converter'''
4: ...sLynx native acquisition files to [[Formats:mzXML|mzXML]]. The program '''requires''' Waters' MassLynx so...
10: | The mzXML conversion tools ReAdW, massWolf, trapper, and mz...
21: ...viewvc/sashimi/trunk/trans_proteomic_pipeline/src/mzXML/converters/massWolf/]. - Software:mzBruker (670 bytes)
1: '''mzBruker: Bruker .baf files to mzXML converter'''
4: Converts analysis.baf files from Bruker into mzXML files. This software requires the
8: ...d by Bruker, for converting their data sources to mzXML. Please jump to our [[Software:CompassXport|Comp... - Formats:mzXML (9722 bytes)
1: ...ts from most vendors can be converted to the open mzXML format.
5: ... [http://sashimi.sourceforge.net/schema_revision/ mzXML schema].
15: ...t acquisition software !! raw file type !! raw-to-mzXML converter !! SPC maintained? !! converter status/...
27: ...ed in mzXML; charge state info is not recorded in mzXML || [http://tools.proteomecenter.org/T2DE.php link...
37: ! format !! original use !! text-to-mzXML converter !! SPC maintained? !! converter status/... - Formats:Overview (422 bytes)
3: *[[Formats:mzXML|mzXML]]: mzXML is used for storing spectra-level data. - TPP:X!Tandem and the TPP (5454 bytes)
14: ...ortant for the quantitation tools, when searching mzXML files directly: - TPP:Mascot and the TPP (957 bytes)
13: ..."MzXML2Search -mgf file.mzXML" (Note that the old mzxml2other is retired)
17: ...at) back to the directory where the original file.mzXML file is.
21: ...he *.dat file so that it has the same name as the mzXML but with the *.dat extension (file.dat). - Software:Tandem2XML (1413 bytes)
24: When searching mzXML files directly, note that the following Tandem pa...
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