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  1. Export questions discussion list (2232 bytes)

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  1. TPP:V5Feedback (11460 bytes)
    70: * <s>Export spreadsheet from pepxmlviewer doesn't seem to do ...
  2. Software:Prequips:Inclusion List Builder (3897 bytes)
    52: .../docs/prequips_export-peptide-mappings.mov How to export the peptide mappings of the master table.]
    58: ...|Segment information, inclusion list overview and exported inclusion list.
  3. Debugging:CGI programs (328 bytes)
    4: export REQUEST_METHOD=GET
    5: export QUERY_STRING='<<copy and paste from your browser ...
  4. TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11616 bytes)
    107: export PERL5LIB=/usr/local/tpp/lib/perl
    193: ... Paste into URL box: http://www.peptideatlas.org/export/refData/QuickYeastUPS1.zip
    247: [TPP Tools] [Export mzIdentML]
  5. TPP Tutorial v1 (43187 bytes)
    165: ...ults. Also, the Mascot software contains a pepXML exporter.
    414: =Exporting Data=
    415: ...sorting, distribution, graphing and publication. Export can also be done at the peptide analysis level us...
    417: '''From the protXML Viewer, check the ‘Export to Excel’ box and then press the ‘Filter/Sort...
  6. Software:da2tpp (2167 bytes)
    15: 2. Create mzXML files directly from the DA export function or using CompassXport in command line
  7. Glyco-peptide (2495 bytes)
    5: [[Export questions discussion list]]
    50: ...f peptides from surface proteins, proposes common export format.
    52: 2008-08-28 Discuss export details with Bernd
    62: 2008-09-01 Ran export script against unipep data, send email to Bernd.
  8. Glyco-peptide TODO list (1117 bytes)
    15: * re-write UniPep/Human GlycoPeptideAtlas export script using B. Wollscheid format [done]
    21: * Export peptides; look for human orthologs [defer]
    26: * Run export script [done]
  9. Software:TIQAM (7374 bytes)
    13: ... to validate transitions. Best transitions can be exported for quantification.
    14: ...y stop and restart at any time. However, reports (exports) are not saved in the database.
    32: ====Exporting transitions====
    34: Select the project and experiment you want to export transitions. Make your selections. You will get a...
  10. Alt NxST search strategy (1763 bytes)
    9: export PATH=$PATH:/regis/sbeams/archive/sbeams/scripts
  11. NewGlycoPage (2495 bytes)
    5: [[Export questions discussion list]]
    50: ...f peptides from surface proteins, proposes common export format.
    52: 2008-08-28 Discuss export details with Bernd
    62: 2008-09-01 Ran export script against unipep data, send email to Bernd.
  12. Bash/tcsh syntax differences (518 bytes)
    4: $ export $PIPELINE
  13. Processing glycopeptide data (6720 bytes)
    35: export PATH=${PATH}:/users/tfarrah/alt_nxst/ # db/mimas,...
    36: export PATH=${PATH}:/proteomics/tfarrah/bin/alt_nxst/ # ...
  14. TPP:4.2.1 Release Notes (3668 bytes)
    18: ... state determination code; attempts to match the "export to MGF" option in Analyst, with about 85% agreeme...
  15. PABST peptide examples (6378 bytes)
    6: to determine which atlas build to export peptides from. The default config file is shown ...
  16. Using SBEAMS (6046 bytes)
    55: ...ables into XML using $SBEAMS/lib/scripts/Core/DataExport.pl. See contents of /net/dblocal/www/html/dev2/sb...
    57: Example AT_query_option.exportcmd file:
    60: <export_command_list>
    61: <export_data table_name="AT_query_option" qualifiers=""/>
    62: </export_command_list>
  17. Recipe for generating proteotypic peptides for example database (10354 bytes)
    10: export PATH=/regis/sbeams/bin/:/package/genome/tmhmm_sig...
    160: export PATH=/regis/sbeams/bin/:$PATH
  18. ComputationalPredictionofProteotypicPeptides (6488 bytes)
    65: ...utton and between "properties" and "help" text to export a zip file, which contains the program source fil...
  19. Software:MzXML2Search (1961 bytes)
    24: ...nd n2 specifies an optional range of MS levels to export
  20. Msconvert Wine (11104 bytes)
    40: #:export WINEARCH=win32
    41: #:export WINEPREFIX=~/.wine {{pad|5em}}''Default. Choose...

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