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  1. Main Page (6427 bytes)
    29: ** Download directly at: [https://sourceforge.net/projects/sa...
    73: also be downloaded for other uses.
  2. Prequips:Eclipse Setup (5641 bytes)
    7: # Eclipse Project SDK 3.1.2 - 3.2.1 (download from http://www.eclipse.org or a mirror site)
    8: ...he EMF-SDO-XSD build. The update site is: http://download.eclipse.org/tools/emf/updates/site.xml)
    14: Go to http://www.eclipse.org/downloads/index_project.php and select '''Platform''' unde...
    16: Download the archive and extract it into a directory of yo...
    20: Once you have downloaded and set up the Eclipse Project SDK you can use ...
  3. Windows Installation Guide (4572 bytes)
    11: * Download the latest TPP [http://sourceforge.net/projects/s...
    19: ...either the x86 or 64 bit,x64 version and save the download to your desktop. Double-click to install.
    25: ...which may already be installed on your system''. Download each of the following to your desktop and run the...
    27: ...C84275-3B97-4AB7-A40D-3802B2AF5FC2&displaylang=en Download and install MSVC 2008 SP1 (x86)]
    28: ...microsoft.com/en-us/download/details.aspx?id=8328 Download and install MSVC 2010 SP1 (x86)]
  4. Developer: Boost CPP libraries (1820 bytes)
    15: Download boost-jam (ex: uncompress to C:\boost-jam\boost-j...
    17: Download boost source (ex: uncompress to C:\boost-src\boos...
  5. Software:Prequips:Inclusion List Builder (3897 bytes)
    20: == Download ==
    25: * '''NEW''' [http://www.prequips.org/download/software/prequips_0.97_win32.zip Prequips 0.97 + ...
    26: * '''NEW''' [http://www.prequips.org/download/software/prequips_0.97_macosx.zip Prequips 0.97 +...
    30: Download the ZIP archive below for a sample data set to ex...
    32: [http://www.prequips.org/download/data/prequips_ilb_sample-data.zip Sample Data] (8...
  6. TPP:Developer Documentation (23931 bytes)
    51: ... download it for free at: http://xmlsoft.org/XSLT/downloads.html
    66: ...em for your distribution, go to their website and download directly.
  7. TPP:Windows Cygwin Installation (7499 bytes)
    9: ...ou use BioworksBrowser and SequestBrowser, please download and install these tools prior to installing the S...
    11: === Downloading and Running the Setup.exe Installation Program...
    14: ...installation program]. Note, you'll only need to download this once. When we release new versions you can ...
    23: ...etup3.jpg|3. Select a directory where you want to download the temporary<br/>installation files. If unsure ...
    25: ..."http://tools.proteomecenter.org"</nowiki> as the Download Site.
  8. Software:msBID (1414 bytes)
    5: *Please download version 1 of this software for LINUX [http://tool...
    6: *Please download version 1 of this software for Windows [http://to...
    18: * JDK1.6 or Jre1.6 [http://java.sun.com/javase/downloads/index.jsp]
    23: After you download the tar ball, please look at the README.txt insid...
  9. Software:SBEAMS (2104 bytes)
    16: Download from local site:
    23: ...from Web: [http://www.sbeams.org/download/ SBEAMS Download Page] ''Note: You might find a newer version of t...
  10. TPP:Installing on Mac OSX (12870 bytes)
    34: ...lowing instructions on http://www.finkproject.org/download/srcdist.php?phpLang=e
    43: * download and decompress source
  11. Software:PeptideProphet (1728 bytes)
    11: ...omecenter.org/publications/Keller.AnalChem.02.pdf download PDF]
  12. Software:ProteinProphet (6941 bytes)
    64: ...nter.org/publications/Nesvizhskii.AnalChem.03.pdf download PDF]
  13. Software:XPRESS (1756 bytes)
    12: ...eomecenter.org/publications/Han-NatureBiotech.pdf download PDF]
  14. Software:ASAPRatio (1791 bytes)
    13: ...tools.proteomecenter.org/publications/Li.ASAP.pdf download PDF]
  15. Software:Pep3D (1087 bytes)
    12: ...ools.proteomecenter.org/publications/Li-Pep3D.pdf download PDF]
  16. Software:TPP (8918 bytes)
    39: ...v7.0%20%28Arafel%29%20rev%200/TPP_Setup_7.0.0.exe/download here]. There are also detailed instructions on h...
    42: ...20v7.0%20%28Arafel%29%20rev%200/TPP_7.0.0-src.tgz/download here], on the Sashimi project site on SourceForge...
    45: ...ced topics are for developers. Windows users can download and run the TPP Windows installer, which includes...
    52: ...afel%29%20rev%200/TPP-7.0.0-Arafel-macosx-pkg.pkg/download package!]
  17. Software:SpecArray (1001 bytes)
    3: Please download this software from the [http://sourceforge.net/pr...
  18. Software:ReAdW (1604 bytes)
    23: *Download from SourceForge Sashimi project file release: [h...
  19. Software:mzStar (1909 bytes)
    9: ...d Analyst 1.4.1 installations (remember, you must download the appropriate converter for your own software.)
    29: *Download from the [http://sourceforge.net/project/showfile...
  20. TPP:Example data analysis (2562 bytes)
    14: # Download the file from the following link: http://tools.pr...
    20: The sample data you've downloaded was searched with '''Sequest''' using the ''run...

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