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- Software:Prequips:Inclusion List Builder (3897 bytes)
41: .... A new subdirectory named "prequips_xxx" will be created ("xxx" will be replaced by the version and the OS... - TPP:Developer Documentation (23931 bytes)
555: Wiki version created by J. Tasman. - Software:ProteinProphet (6941 bytes)
40: ...used if and only if the input pepXML file(s) were created by iProphet. ''iProphet is not yet released to th... - TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11616 bytes)
70: ...LL_DIR and TPP_DATADIR to match the locations you created above. Leave TPP_DATAURL and TPP_BASEURL as is un... - Software:XLink (3210 bytes)
17: ...a, that was acquired based on mass inclusionlists created by iXLINK, to peptides included in iXLINK's preli... - Formats:protXML (124 bytes)
1: ...change, and processing of protein identifications created from ms/ms-derrived peptide sequence data. - Formats:mzXML (9722 bytes)
54: ...l reasons only, we provide a page on our own (SPC-created) ''retired'' open-source Bruker converter, [[Soft...
124: ...: mzData and mzML. mzData was the first attempt, created by the HUPO/PSI committee process. Many vendors ... - Formats:Overview (422 bytes)
1: These open formats were created at the ISB/SPC for the purposes of sharing and pr... - Software:Out2XML (2805 bytes)
39: ...B link to a linux compatible db link in the newly created params file. As well, it converts this link in al... - TPP:Installing on Ubuntu 7.04 (9446 bytes)
129: As a final step, I created a <code>data</code> directory within my TPP insta... - Software:SpectraST (70083 bytes)
114: ...raST’s <code>.splib</code> format, which can be created in [[#SpectraST Create Mode|SpectraST Create Mode...
146: ...Lastly, a file <code>spectrast.log</code> is also created to document the command executed. Some useful inf...
154: ...g experimental spectrum. (If the .pepXML file is created with TPP tools, this should not be an issue.) </d...
259: ...). The fragmentation methods CID-QTOF and HCD are created to tag such spectra, and that information is auto...
319: ...modification which will be written to the library created. - Spectrast create.params (4398 bytes)
77: ...rt a remark in the comment for each library entry created
83: # Whether or not to use binary format for library created - TPP Tutorial v1 (43187 bytes)
101: You have just created the password ‘TPP’ for the user ‘tutorial....
149: ...king on the ‘TPP Web Tools’ shortcut that was created on your desktop during installation or by selecti...
198: .... A basic PepXML file, like the six that you just created contain only search-engine results. After further...
406: ...ore heavily, and the simplest list of proteins is created. - Software:da2tpp (2167 bytes)
9: ...or database search. da2tpp.pl uses the mzXML file created with CompassXport to find scan numbers for each p... - Glyco-peptide (2495 bytes)
25: - responded. Contributed several test datasets created while testing HPINs technology. These use a larg...
31: - responded. Created a separate list from his cell surface data, will ... - Software:Firegoose, Gaggle, and PIPE (3189 bytes)
2: ...verage software tools developed independently and created specifically for different computational tasks in... - Building Peptide Atlas (26978 bytes)
14: ...two diseased patients. The pepXML files should be created by searching the spectra with a database search e...
29: .... Owner of project should be the experimenter who created the data. Project tag should match name of subdir...
75: Files created in build directory, all but last created by createPipelineInput.pl:
104: ...ides in our atlas; PeptideAtlas accessions used. (Created by generateFiles() in pipeline/bin/PeptideFilesGe...
106: Files created in the directory for each experiment: - TPP Tandem search (19915 bytes)
52: You have just created the password ‘TPP’ for the user ‘tandem.’
67: ...king on the ‘TPP Web Tools’ shortcut that was created on your desktop during installation or by selecti...
215: # The tandem parameter file which we just created (tandem_params.xml)
248: This should show the 6 pepXML files that were created from the command Tandem2XML. - NewGlycoPage (2495 bytes)
25: - responded. Contributed several test datasets created while testing HPINs technology. These use a larg...
31: - responded. Created a separate list from his cell surface data, will ... - TPP:Building Windows-native binaries with Mingw (3414 bytes)
37: ==Where are the Mingw build files created?==
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