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  1. Software:TPP (32 links)
  2. Formats:mzXML (17 links)
  3. Windows Installation Guide (11 links)
  4. TPP Tutorial (9 links)
  5. Formats:pepXML (7 links)
  6. TPP:5.2 Installation (6 links)
  7. Software:ASAPRatio (5 links)
  8. Software:Tandem2XML (5 links)
  9. Software:SpectraST (5 links)
  10. Software:PeptideProphet (5 links)
  11. Software:XPRESS (5 links)
  12. TPP:Using Petunia (5 links)
  13. Software:ReAdW (5 links)
  14. Software:SBEAMS (5 links)
  15. Software:ProbID (4 links)
  16. TPP:Related Tools (4 links)
  17. Formats:protXML (4 links)
  18. Software:Pep3D (4 links)
  19. Software:ProteinProphet (4 links)
  20. Software:mzBruker (4 links)
  21. Software:mzStar (4 links)
  22. Software:MzXML2Search (4 links)
  23. Software:Petunia (4 links)
  24. TPP:Example data analysis (4 links)
  25. TPP:X!Tandem and the TPP (4 links)
  26. TPP AMZTPP (4 links)
  27. Software:Out2XML (4 links)
  28. Software:massWolf (4 links)
  29. TPP Tutorial v2 (3 links)
  30. Software:Libra (3 links)
  31. Software:Overview (3 links)
  32. Prequips (3 links)
  33. Software:Mascot2XML (3 links)
  34. TPP:Supported Search Engines (3 links)
  35. Software:Mayu (3 links)
  36. Software:mzWiff (3 links)
  37. Formats:Overview (3 links)
  38. Software:iProphet (3 links)
  39. TPP Tutorial v1 (3 links)
  40. Building Peptide Atlas (3 links)
  41. SpectraST (3 links)
  42. TPP:Getting the sourcecode for a windows build (2 links)
  43. TPP:Recent Updates (2 links)
  44. TPP 6.2.0: Installing on Ubuntu 22.04 LTS (2 links)
  45. PeptideAtlas software (2 links)
  46. Software:msBID (2 links)
  47. TPP:5.2.0 Release Notes (2 links)
  48. TPP Amazon Machine Images (2 links)
  49. TPP:Building Windows-native binaries with Visual Studio 2005 (2 links)
  50. TPP:Installing on Ubuntu 7.04 (2 links)

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