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ISB MS XML Formats
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mzXML | - | Format for storing scan data (MS and MS2) associated with a single run of a Mass Spectrometer along with meta-information specific to the experiment.
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pepXML | - | Format for storing search results of MS2 data that has been searched with a database search engine (currently Sequest, Mascot, or Comet). This format can also store information from the statistical validation of this data with PeptideProphetTM and quantification of MS data with XPRESS, ASAPRatio, and Libra.
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protXML | - | Format for storing search results of MS2 data that has been processed with the ProteinProphetTM validation software. This format can also store quantification of MS data with XPRESS, ASAPRatio, and Libra.
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PSI MS XML Formats
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dataXML | - | Merged format of mzData and mzXML.
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mzData | - | Format for storing spectral data from MS experiments, partially processed data such as peak lists, and meta-information specific to how the corresponding data were collected and processed.
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mzIdent | - | Early format for storing spectra identified by database searching.
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PSI Molecular Interactions Format
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MI XML | - | The PSI MI format is a data exchange format for molecular interactions.
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