SAMPLE DATA

Here are some sample files that have been processed using the proteomics software tools that are available on this site.

Download from local site:

• Sample RAFT Dataset
  This data is for the Windows/Cygwin Tools Version.
  (Please install the tools before applying the steps below.)
  (You can download Linux data from the PeptideAtlas Repository)
  • raftapr_README - dataset information
  • raftapr_dat.tgz (206 Mb) - dat format
  • raftapr_searched.tgz (97 Mb) - Search Results
    1. Download this file to C:\Inetpub\wwwroot\ISB\data
    2. Open a cygwin terminal
    3. Execute command: cd /cygdrive/c/Inetpub/wwwroot/ISB/data/
    4. Execute command: tar xzvf raftapr_searched.tgz
  • raftapr_mzXML.tgz (252 Mb) - mzXML format
    1. Download this file to C:\Inetpub\wwwroot\ISB\data\raft
    2. Open a cygwin terminal
    3. Execute command: cd /cygdrive/c/Inetpub/wwwroot/ISB/data/raft
    4. Execute command: tar xzvf raftapr_mzXML.tgz
  • ipi.HUMAN.fasta.v2.31.gz (12Mb) - Database used to search this dataset
    1. Download this file to C:\Inetpub\wwwroot\ISB\data\dbase
    2. Open a cygwin terminal
    3. Execute command: cd /cygdrive/c/Inetpub/wwwroot/ISB/data/dbase
    4. Execute command: gzip -d ipi.HUMAN.fasta.v2.31.gz
• Small Cleavable ICAT Dataset
  • cleavableICAT_ms2x2_2.RAW
  • sequest.params
  • 10mix.fasta

Download from Web:

• PeptideAtlas Repository
• Sashimi Repository