Seattle Proteome Center (SPC) - Proteomics Tools
NHLBI Proteomics Center at the Institute for Systems Biology

SAMPLE DATA

Here are some sample files that have been processed using the proteomics software tools that are available on this site.

Download from local site:

• Sample RAFT Dataset
  This data is for the Windows/Cygwin Tools Version.
  (Please install the tools before applying the steps below.)
  (You can download Linux data from the PeptideAtlas Repository)
  • raftapr_README - dataset information
  • raftapr_dat.tgz (206 Mb) - dat format
  • raftapr_searched.tgz (97 Mb) - Search Results
    1. Download this file to C:\Inetpub\wwwroot\ISB\data
    2. Open a cygwin terminal
    3. Execute command: cd /cygdrive/c/Inetpub/wwwroot/ISB/data/
    4. Execute command: tar xzvf raftapr_searched.tgz
  • raftapr_mzXML.tgz (252 Mb) - mzXML format
    1. Download this file to C:\Inetpub\wwwroot\ISB\data\raft
    2. Open a cygwin terminal
    3. Execute command: cd /cygdrive/c/Inetpub/wwwroot/ISB/data/raft
    4. Execute command: tar xzvf raftapr_mzXML.tgz
  • ipi.HUMAN.fasta.v2.31.gz (12Mb) - Database used to search this dataset
    1. Download this file to C:\Inetpub\wwwroot\ISB\data\dbase
    2. Open a cygwin terminal
    3. Execute command: cd /cygdrive/c/Inetpub/wwwroot/ISB/data/dbase
    4. Execute command: gzip -d ipi.HUMAN.fasta.v2.31.gz
• Small Cleavable ICAT Dataset
  • cleavableICAT_ms2x2_2.RAW
  • sequest.params
  • 10mix.fasta

Download from Web:

• PeptideAtlas Repository
• Sashimi Repository