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- Main Page (6445 bytes)
22: * conversion of raw data to open formats;
24: * conversion of search engine results to a unified format;
28: * '''The latest TPP version is ''7.0.0,'' released ''March 2024''.''' - TPP:V5Feedback (11460 bytes)
9: == Feedback related to TPP version 5.0 builds ==
115: ... CGI::multi_param is not a valid subroutine (new version of CGI.pm)
130: * mzIdent conversion fails '''Potentially fixed with the perl script f... - Prequips:Eclipse Setup (5641 bytes)
9: # Subclipse to access the Subversion repository (update site: http://subclipse.tigris....
20: ...sponding update site URLs. Then select the latest version of the feature and install. (NOTE, that had to in...
21: to get the version that also contained XSD)
23: == Subversion Repository ==
25: Prequips source code can be retrieved from the Subversion repository located at http://db.systemsbiology.ne... - Windows Installation Guide (4572 bytes)
2: These instructions are meant for versions of TPP 4.8.1 and prior.
8: Installing the Windows version of the TPP is fairly straightforward. Detailed in...
10: * Install the latest version of ActivePerl (some versions will not work)
17: ...u happen to already have ActivePerl installed any versions newer than 5.9 its probable that it will work. ...
19: ...e of the page select either the x86 or 64 bit,x64 version and save the download to your desktop. Double-cli... - TPP:Supported Search Engines (1578 bytes)
9: ...e database search engine provided with TPP (as of version 4.7.1)
12: ...now distributed as part of the Windows TPP (as of version 3.2.1). - Prequips:Bugs (772 bytes)
7: *The Motif version produces the following error message: <code><nowi... - Developer: Boost CPP libraries (1820 bytes)
22: * *.dll Dynamic library version.
26: * lib*.lib Static library version. - Software:Prequips:Inclusion List Builder (3897 bytes)
36: ... JRE installed you may download a more up-to-date version from http://java.sun.com.
41: ...x" will be created ("xxx" will be replaced by the version and the OS identifier, e.g. "macosx" or "win32"). - TPP:Developer Documentation (23931 bytes)
10: ==Version control==
63: *xerces (version?)
149: Be sure to link to the appropriate tpp-version number.
199: ====Conversion of raw spectroscopy data to mzXML format====
398: ...: calculate monoisotopic peptide masses during conversion to pepXML - TPP:Windows Cygwin Installation (7499 bytes)
14: ... need to download this once. When we release new versions you can still use the same installer.
66: ...in setup program; re-running will find the latest version via the internet. Just follow the Cygwin install...
72: If you want to force the current version to reinstall, rerun the cygwin installer. When y... - Software:msBID (1414 bytes)
5: *Please download version 1 of this software for LINUX [http://tools.proteo...
6: *Please download version 1 of this software for Windows [http://tools.prot... - Software:SBEAMS (2104 bytes)
21: ...version is required to run SBEAMS. The stock CPAN version will not work properly.
23: ...AMS Download Page] ''Note: You might find a newer version of this software by following this link.'' - TPP:Frequently Asked Questions (5647 bytes)
3: ===What is the current version of the TPP?===
4: The current version is 7.0.0, released March 2024
10: Installation of the Linux version requires the ability to interact with the shell, ...
71: The versions are named according to various weather patterns. - TPP:7.0.0 Release Notes (6764 bytes)
10: * Adding CUDA supporting python version (Windows)
67: * Update to latest versions of assess_swathlib and DIALib-QC_RPlot
110: * Many changes to basic version including learning RTs and predicting RTs based o... - TPP:Installing on Mac OSX (12870 bytes)
8: This guide describes installation of the TPP, version v4.0 SQUALL (release candidate) rev.0, Build 2008...
11: Latest Mac OSX version used for testing: '''Intel 10.5.2'''
22: *Subversion Repository:
180: version 4.1.5:
191: Perhaps with older versions of fink, some report that it is necessary to edi... - Software:TPP (8915 bytes)
29: The latest TPP version is <b>7.0.0</b>, released March 2024.
39: ... guide]]. (instructions also apply to 6.x and 7.x versions) - TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11579 bytes)
3: ...but perhaps can be a useful head start. For other versions of TPP, please see the README and INSTALL_LINUX ...
14: ...ands for Long Term Support, which means that this version of Ubuntu will be stable and supported for severa...
30: sudo apt --yes install subversion
84: ...re it out, post the operating system version, TPP version, and compilation error messages to spctools-discu...
91: ...s are available. The following works on the fresh version of Ubuntu 22.04 LTS that we tried on: - Software:ReAdW (1604 bytes)
8: ...ProteoWizard package. For convenience the latest versions of TPP contain this program.
10: ==Current Version==
11: ReAdW version 4.3.1 was released on September 9, 2009. The lat... - Software:mzStar (1909 bytes)
9: ...rrently, we have fixed the problem and recompiled versions for Analyst 1.1 and Analyst 1.4.1 installations ...
11: The Analyst 1.1 version included since the TPP 3.0.3 distrution does not ...
21: ...ch the version of Analyst, which must be the same version used to produce the files you wish to convert. - Software:Cytoscape (722 bytes)
3: ...ession profiles and other state data. The current version of Cytoscape is v2.4.
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