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- TPP:Developer Documentation (23931 bytes)
414: ;-t : run regression test against a previously derived result
415: ;-t! : learn results for regression test - TPP:Installing on Mac OSX (12870 bytes)
9: Test machine: MacBook Pro, 2.33 GHz Intel Core 2 Duo, ...
11: Latest Mac OSX version used for testing: '''Intel 10.5.2''' - TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11616 bytes)
15: * This recipe was tested on a fresh Azure cloud computing platform insta...
57: very latest development code from trunk via the commented out...
104: Now test to make sure all modules are installed:
108: ./test_tpi.pl
117: ...ither now or after some further configuration and testing below, you may wish to delete the build direct... - Software:Mascot2XML (2806 bytes)
20: ...) (-desc) (-shortid) (-verbose) (-t(!)<regression test>)
29: ... to create a regression test basis file named foo.test
30: ...ck against a regression test basis file named foo.test
31: ...use -t! or -t to learn/use an automatically named test - TPP Tutorial v1 (43187 bytes)
277: ...alculated, outliers are checked for using Dixon's tests, and the relative abundance and confidence inter...
412: ...alues” column gives the result of a statistical test for the quantitative values. - Software:SuperHirn (11737 bytes)
4: ...ould like to acknowledge all people who helped to test the new version, provided use with ideas and inpu...
15: ...med in C++ and is compatible with Unix platforms (tested on Linux and OSX). LC-MS data are preprocessed ...
30: ...ellelu/web/SuperHirn/example_data_set.zip Example Test Set]. - Glyco-peptide (2495 bytes)
25: .... Contributed several test datasets created while testing HPINs technology. These use a large serum gly... - Expert search and TPP usage (12929 bytes)
78: WARNING: Mixture model quality test failed for charge (2+).
118: ...ds work, but I encourage use of the following for testing. The intent is that you can search any set of ...
146: setenv TESTDEVPATH /tools/bin/TPP/tpp-dev/bin
168: setenv TESTDEVPATH /tools/bin/TPP/tpp-dev/bin
184: setenv TESTDEVPATH /tools/bin/TPP/tpp-dev/bin - TPP:Installing on Ubuntu 8.10 (3812 bytes)
44: libboost-test-dev 1.34.1-11ubuntu1
45: libboost-test1.34.1 1.34.1-11ubuntu1 - Terry's compbio links (11123 bytes)
82: ....com/developerworks/library/l-bash-test.html Bash tests and comparators].
95: ...nks.org/?node_id=469927 Informative discussion of test module options]
141: ...al]], [[TPP_Tutorial | Long TPP tutorial]], [[TPP testimonials]]
147: ...tal data storage system. Go here to run an SBeams test drive. - NewGlycoPage (2495 bytes)
25: .... Contributed several test datasets created while testing HPINs technology. These use a large serum gly... - TPP Tutorial v2 (15736 bytes)
7: ...making sure that you select to download the the latest version of TPP from our [http://sourceforge.net/p...
15: == 2. Download and install the test data and database == - TPP:4.3.0 Release Notes (13496 bytes)
51: == improved linux/mac build testing ==
53: ....2 64-bit) and Mac OS X (10.5 64-bit) in order to test compilation.
83: ...eCharges (mzXML 3.1) is taken into account (note, tested.)
305: ....0 to 1.39.0. Includes Improved 64-bit support. Tested on Centos 5.2 64-bit and Ubuntu 9.04 64-bit. - Msconvert Capabilities (15313 bytes)
1: Testing of MSconvert is in progress and results will b...
23: ... results written to file /proteomics/gsun/trapper-test/trapper/interact-prob.pep.shtml
50: ... results written to file /proteomics/gsun/trapper-test/trapper/interact-ipro.pep.shtml
70: . . . reading in /proteomics/gsun/trapper-test/trapper/interact-ipro.pep.xml. . .
83: ... results written to file /proteomics/gsun/trapper-test/trapper/interact-highprob.pep.shtml - PeptideSieveRetrainingTutorial (9535 bytes)
52: ...s test.train, then the description file should be test.default. The description file contain the informa...
54: ...alization method to normalize the training input, test.train. You can do this either through graphical u...
57: :::''# ./test.norm.simple.run''<br/>
59: :::''-finput test.train -fdescribe test.defaults -normalization 1\''<br/>
60: :::''-fparam test.norm.simple -debug 0 -verbose 3 \''<br/> - TPP:4.4.0 Release Notes (31941 bytes)
77: Limited testing gives speeds up to 5x faster than previous ver...
91: * added experimental wavelet smoothing. Test using new ASAPRatioPeptideParser -w command line ...
111: [pwiz] sync up to latest from ProteoWizard, their rev 2047
119: ...one error that left the last entry in the index untested.
302: ...names that come with it whacks out the regression test files. - ReleasePlanning (12743 bytes)
39: * Update to very latest comet
49: ...o have a 2 GB library limit on Windows? Linux not tested.
91: ...dd "output folder" option for Petunia Search, and test from there
177: * Included Terry's latest version of Inspect2PepXML.py for patching inspect... - TPPDev:Branching (5376 bytes)
11: ...lways be runnable. Nightly a script builds the latest trunk and installs it on a linux system at ISB (/...
13: ...runk. Any code changes (fixes) identified during testing of the branch are checked into the branch. I'...
15: ... on a special branch so that the changes could be tested separately and not affect the TPP class. When...
29: ...fix...build...test
37: ...build...test.... - TPPDev:ReleaseChecklist (1043 bytes)
25: ** Build windows installer and test - TPP SEWW Demo2012 (29568 bytes)
7: ...]], making sure that you select to download the latest version of TPP from our [http://sourceforge.net/p...
25: ...olumn. If there are multiple versions, use the latest. To find the installed location look for the ''L...
56: === 1. Download and install the test data and database ===
285: ...there to see if the TPP is set up correctly. The test files for that tutorial are the same as for the S...
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