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1. Software:TPP (8915 bytes)
   16: ...p://tools.proteomecenter.org/wiki/index.php?title=TPP_Tutorial#8._Further_peptide-level_validation_iProphet]]
2. TPP Tutorial v1 (43187 bytes)
   3: ...mpler) tutorial that you may want to follow, at [[TPP_Tutorial]].</span>
   258: ...f different experimental groups can be compared [[TPP_Tutorial#1|(1)]].
   269: ...isotope labels (such as 8 Da for old ICAT data) [[TPP_Tutorial#2|(2)]]. XPRESS was the first of the two quantif...
   277: ... and provides a criterion for protein profiling [[TPP_Tutorial#3|(3)]].
   387: ...ptide corresponds to several different proteins [[TPP_Tutorial#4|(4)]].
3. Terry's compbio links (11123 bytes)
   30: [https://54.243.235.221/jira/secure JIRA] for reporting issues with ITMI
   141: [[TPP_Demo2009 | Short TPP tutorial]], [[TPP_Tutorial | Long TPP tutorial]], [[TPP testimonials]]
4. TPP Tandem search (19915 bytes)
   6: ...xtends and uses some material from this earlier [[TPP_Tutorial | TPP Tutorial]].
   12: ... from this [[TPP_Tutorial | TPP Tutorial]]. The [[TPP_Tutorial | TPP Tutorial]] begins with passing the results ...
   104: ...c1a?lnk=gst&q=_default_input_location_#ba7620b7fef22c1a bug] in TPP 4.0.2 regarding the _DEFAULT_INPU...
   259: If you have gone through the other [[TPP_Tutorial#PepXML_Viewer | TPP Tutorial (PepXML Viewer secti...
   284: The subsequent analysis is covered in the [[TPP_Tutorial#Peptide_Level_Analysis | TPP tutorial]] and will ...
5. TPP Tutorial v2 (15736 bytes)
   1: ...mpler) tutorial that you may want to follow, at [[TPP_Tutorial]].</span>
6. TPP Tutorials (1274 bytes)
   5: * [[TPP_Tutorial]] - The definitive guide to getting started with ...
   8: * [[TPP_AMZTPP#Windows_Tutorial_for_amztpp|TPP_AMZTPP_Tutorial]] - Use the command line program amztpp to run a ...
   22: * [[TPP_Tutorial_v1]] - Tutorial for early versions of TPP.
   23: * [[TPP_Tutorial_v2]] - 2nd version of TPP tutorial.
7. Tutorial:StPeter1 (3074 bytes)
   5: ...o perform these tasks, we recommend the broader [[TPP_Tutorial|TPP Tutorial]]. For simplicity, the tutorial make...

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