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- Prequips:Eclipse Setup (5641 bytes)
31: ...ry Location ...'''. Enter the repository location shown in the previous section and click '''Finish'''.
33: A list of projects will show up in the view. Select the '''prequips_core''' pr... - Software:PeptideProphet (1728 bytes)
8: ...MS/MS spectrum a probability of being correct. We show that using the probabilities computed from the mo... - Software:SpectraST (70083 bytes)
89: ... users: Visit the [http://sourceforge.net/project/showfiles.php?group_id=69281&package_id=126912 Sashimi...
382: Commonly used options are shown in '''bold'''. The rest are advanced options tha...
443: | -s_SHH||hitListShowHomologs||Always displays homologous lower hits re...
445: ... for hits shown for each query, e.g. -s_SHR3 will show the top 3 hits.||Default is 1. - TPP Tutorial v1 (43187 bytes)
15: ...process their data a step further. This tutorial shows an example of how to run the TPP tools so that s...
62: .... For components of the pipeline this will often show the syntax necessary to run the program and optio...
190: ...command will take a moment to run. '''Select the Show Command Status link.''' You will need to '''upda...
238: ...ntaining the COMET sequence viewer.''' This tool shows the location of the assigned peptide in the prot...
258: ...ctrum a probability of being correct. It has been shown that using the probabilities computed from the m... - TPP Tandem search (19915 bytes)
17: ...r can be found at [http://sourceforge.net/project/showfiles.php?group_id=69281&package_id=126912 sourcef...
30: ... can be found at: [http://sourceforge.net/project/showfiles.php?group_id=69281&package_id=126912 sourcef...
248: This should show the 6 pepXML files that were created from the com...
259: ...ht notice that some of the columns are different (shown below). - Software:RemoteConvert (4181 bytes)
48: ./ remoteconvert.pl : show some examples command to run the software.
50: ./ remoteconvert.pl –showoptions: show all options available for each converter - PABST peptide examples (6378 bytes)
2: ...rs. The current default parameter weightings are shown below, and the lower sections
3: show links to example peptides along with comments to ...
6: ...export peptides from. The default config file is shown below the usage stmt, these values will be used ...
30: -s, --show_builds Print info about builds in db
32: show builds, will be used in LIKE clause, with wildcar... - TPP:4.3.0 Release Notes (13496 bytes)
23: ...er is being used to select a search db, let's not show stuff like pepXML or mass spec data that we know ...
196: * Add MRM table format SHOWINFO which prints additional info about each trans...
261: * Recognize iProphet and show those probabilities when available.
263: * Show iProphet probabilities and results. - Recipe for generating proteotypic peptides for example database (10354 bytes)
2: to include changes needed to show (almost) all peptides. Updated based on 2009-08 - TPP:4.5.1 Release Notes (4270 bytes)
24: ** Do not show Clipboard pane if empty - PeptideAtlas:Chromosomal coverage (4563 bytes)
10: **For example, to show the section of Chromosome seven between 30 millio...
20: ...ing viewed, and what portion of the chromosome is shown. The five informational tracks are from top to b...
26: ...ens when they are so close to one another that if shown in a single row it would be nearly impossible to...
28: ...nd end coordinates of the gene. This track should show completeness of an atlas build in a given region,... - Using mProphet at ISB (2651 bytes)
3: ... bug fixes implemented at ISB. These instructions show you how to use these versions. - TPP:4.5.1 SVN Log (9734 bytes)
129: - Do not show Clipboard div if empty - TPPDev:Branching (5376 bytes)
49: % svn mergeinfo ^/branches/TPP-4.6 --show-revs eligible - AMZTPP:FAQ (5115 bytes)
23: ... being considered for a future release as it does show some promise in reducing the storage costs.
27: ... being considered for a future release as it does show some promise in reducing the storage costs.
33: Tests show that the optimal balance between execution time a... - TPP SEWW Demo2012 (29568 bytes)
209: * Notice that this brings up the form that shows the values that are locked for this module and c...
222: ...s brings up the workflow diagram which updates to show a graphical depiction of the workflow running. W...
245: ...ror) to hug the lower left corner. The lower pane shows how well the data (black line) follows the Pepti...
293: ...fly flickers then disappears, the log file should show the problem. Check that both the '''JETTY_HOME''... - TPP WISB Demo2012 (16916 bytes)
189: * Notice that this brings up the form that shows the values that are locked for this module and c...
202: ...s brings up the workflow diagram which updates to show a graphical depiction of the workflow running. W...
211: ...ror) to hug the lower left corner. The lower pane shows how well the data (black line) follows the Pepti... - TPP:4.6.0 SVN Log (19654 bytes)
13: - New css classes to show queued jobs
105: ...it should be identical when using "native". Tests show identical hyperscores, evalues, and peptide resul...
327: ... page: can register/delete keys and check status; Show 'no jobs' in Jobs status tooltip if none have bee... - TPP:4.6.2 SVN Log (29692 bytes)
166: ...acks cancelled spot requests as they don't always show up as - TPP:4.7.0 SVN Log (41695 bytes)
323: https://bugzilla.redhat.com/show_bug.cgi?id=825039
629: ShowXIC.cgi - tool for visualizing Single Ion Current ...
633: ...er: New feature, MZratio now is a link to the new ShowXIC.cgi tool.
637: ShowXIC.cgi - tool for visualizing Single Ion Current ...
657: ShowXIC.cgi - tool for visualizing Single Ion Current ...
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