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- TPP:Mascot and the TPP (957 bytes)
1: ==What is Mascot?==
2: Mascot is a commercial, closed-source search engine sold...
4: ==Using Mascot and the TPP==
6: ===Mascot and the TPP GUI (Petunia)===
7: Mascot is fully supported by the TPP GUI (Petunia.)
Page text matches
- TPP:Supported Search Engines (1578 bytes)
32: ===[[TPP:Mascot and the TPP|Mascot]]===
33: [http://www.matrixscience.com/ Mascot] is a commercial search engine, distributed by Ma... - TPP:Developer Documentation (23931 bytes)
211: *For Mascot results, you must specify the database used for s...
213: Mascot2XML summary.dat -D/full/path/database
268: ====Mascot2XML====
269: Mascot2XML summary.dat -D/full/path/mydatabase.fasta (-p... - Software:TPP (8915 bytes)
93: ...ML2Search]]: Converts mzXML files to SEQUEST dta, MASCOT mgf, and Micromass pkl files
107: *Mascot results: [[Software:Mascot2XML|Mascot2XML]]
115: The TPP currently supports Sequest, Mascot, ProbID, X!Tandem, Comet, SpectraST, MSGF+, Inspe... - Formats:pepXML (2274 bytes)
39: Mascot: [[Software:Mascot2XML|Mascot2XML]] - Formats:mzXML (9722 bytes)
43: | .mgf|| mascot || ? || ? || ? || ?
85: ...t is another simple text format developed for the Mascot search engine. - Software:Mascot2XML (2806 bytes)
5: Converts Mascot search results in .dat files to pepXML (.xml) for...
8: ... search-engine results. '''Mascot2XML''' coverts Mascot-specific search results to pepXML.
13: ...can be accessed from the web interface, under the Mascot mode --> Analysis Pipeline --> pepXML
19: Mascot2XML(TPP v3.1 SQUALL rev.0, Build 200705311046)
20: usage: Mascot2XML <file.dat> (-D<database>) (-E<sample_enzyme>)... - TPP:Mascot and the TPP (957 bytes)
1: ==What is Mascot?==
2: Mascot is a commercial, closed-source search engine sold...
4: ==Using Mascot and the TPP==
6: ===Mascot and the TPP GUI (Petunia)===
7: Mascot is fully supported by the TPP GUI (Petunia.) - Software:SpectraST (70083 bytes)
110: * .mgf (Mascot Generic) format
195: ....xml (SEQUEST results of A1.mzXML),<br>A-MAS.xml (Mascot results of A1.mzXML)||A1.mzXML - TPP Tutorial v1 (43187 bytes)
157: ...l down menu that lets you choose between SEQUEST, Mascot, Tandem or SpectraST. The default is SEQUEST whi...
165: ...ST, Mascot, COMET and X!Tandem results. Also, the Mascot software contains a pepXML exporter. - Software:da2tpp (2167 bytes)
5: ... converter for the TPP. DA MGF file searched with Mascot or any other engine produces DB search result fil... - TPP:Related Tools (6244 bytes)
62: ===Mascot===
63: [http://www.matrixscience.com/ Mascot] is a commercial search engine, distributed by Ma... - TPP Tandem search (19915 bytes)
75: ...l down menu that lets you choose between SEQUEST, Mascot, Tandem or SpectraST. The default is SEQUEST. ''... - Software:Mayu (3991 bytes)
78: ...e discriminant score (e.g. PeptideProphet, xcorr, mascot ion - TPP:4.1 Release Notes (1819 bytes)
31: ...d by editing tpp_gui_config.pl so your changes to Mascot Server location etc don’t get blown away on eac... - Software:MzXML2Search (1961 bytes)
2: Converts mzXML files to SEQUEST dta, MASCOT mgf, and Micromass pkl files. - TPP:4.4.0 Release Notes (31941 bytes)
107: [Mascot2XML] fatal error messages about enzyme definition...
314: [Mascot2XML] handle yet another title variant, example: "...
474: ** Searching MGF (Mascot Generic Format) files
510: ...Needed for large peaklists from new instrument as Mascot will complain if input peak list exceeds 10,000 c... - TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (12202 bytes)
171: 'pipeline' => 'Tandem', # one of [Sequest Mascot SpectraST Tandem] - ReleasePlanning (12743 bytes)
198: * <strike>Petunia: rename Mascot file on download</strike> ''done'' - TPP:4.5.2 Release Notes (4692 bytes)
10: * Added a utility script to rename Mascot F files to original mz(X)ML base name
14: * [petunia] Enhanced Mascot support:
15: ** Added auto-renaming of Mascot F01234.dat files to original base name of mz(X)ML...
16: ** Added search info on Mascot results download page
18: ** Fixed typo in Mascot DB filter box - TPP:4.5.2 SVN Log (7911 bytes)
41: [new] Utility script to rename Mascot F files to original mz(X)ML base name
45: [petunia] Enhanced Mascot support:
46: - Added auto-renaming of Mascot F01234.dat files to original base name of mz(X)ML...
47: - Added search info on Mascot results download page
49: - Fixed typo in Mascot DB filter box
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