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- TPP:Files and Formats (299 bytes)
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- Main Page (6445 bytes)
29: ...tly at: [https://sourceforge.net/projects/sashimi/files/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v7.0...
44: ...stor integrates TIQAM-PeptideAtlas output, pepXML files, and other data in order to select transition lis...
65: experiments. Mass spectrometer output files are collected for human, mouse, - TPP:V5Feedback (11460 bytes)
38: ...e a limit to post/put forms found by deleting 25+ files in petunia</s>
74: * <s>Can't remove mzML files from processing search form</s>
158: ** Which files? taxonomy.xml and tandem_params.xml only? or more...
159: ...o access forbidden directory error when selecting files and adding them. It's comparing $data_dir with p... - Software:Prequips (1386 bytes)
5: ...om mzXML, pepXML, Bioworks (tabular), and protXML files. - Windows Installation Guide (4572 bytes)
11: ...test TPP [http://sourceforge.net/projects/sashimi/files/Trans-Proteomic%20Pipeline%20%28TPP%29/ here] and...
35: ...e at the [http://sourceforge.net/projects/sashimi/files/ Sourceforge website] =====
39: ...wnlink doesn't recognize your platform select the Files link in the project header. Next select the "Tra... - Prequips:FAQ (1189 bytes)
33: # It's recommended to move mzXML files to the local hard disk and load them from there i... - Prequips:Wishlist (444 bytes)
3: ...ading of all meta information in pep- and protXML files<br>--[[User:Gehlenbo|Gehlenbo]] 12:05, 7 August 2... - Developer: Boost CPP libraries (1820 bytes)
33: C:\Program Files\Microsoft Visual Studio 8\VC\bin\vcvars32.bat
58: C:\Program Files\Microsoft Visual Studio 8\VC\bin\vcvars32.bat - Software:Prequips:Inclusion List Builder (3897 bytes)
32: ...s comprised 3 files and the inclusion list runs 5 files.) - TPP:Developer Documentation (23931 bytes)
36: NOT ACCEPTABLE are files with text outside of a bracket tag enclosure, suc...
53: Add LD_LIBRARY_PATH files to /etc/ld.so.conf
56: The viewing of large xml files is sometimes slow. We are hoping to optimize the...
72: ...el packages</b>, in order to have the required .h files.
114: ...al/tpp/etc : contains miscelaneous configuration files - TPP:Windows Cygwin Installation (7499 bytes)
23: ...u want to download the temporary<br/>installation files. If unsure the "Desktop" is a good default.
80: ...C:\cygwin directory. If you get the warning that files are in use and cannot be deleted, log off and/or ... - TPP:Directory Layout (1000 bytes)
43: C:\Inetpub\wwwroot\ISB\html\help: help-related files - TPP:Frequently Asked Questions (5647 bytes)
61: ===How do I upload files to the SPC tools team?===
64: ...tools-discuss], we ask newgroup members to upload files to our ftp site so we can debug issues. The site... - TPP:7.0.0 Release Notes (6884 bytes)
53: ... BUGFIX * parsing protein descriptions from fasta files running on CentOS (reported by Jimmy)
89: * [tpp_files] Case-INsensitive sorting of files and dirs - TPP:Installing on Mac OSX (12870 bytes)
20: ... SourceForge: [http://sourceforge.net/project/showfiles.php?group_id=69281&package_id=126912]
29: ...Apple may have erased previously installed X11SDK files; if you get errors from Fink regarding X11, reins...
40: ... is '''not recommended'''-- it sets up the config files in an unfamiliar way.
152: *restarting (if you change config files)
220: * get source (http://sourceforge.net/project/showfiles.php?group_id=7586) - Software:TPP (8915 bytes)
39: ...ge site [https://sourceforge.net/projects/sashimi/files/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v7.0...
42: ...found in the '''README''' and '''INSTALL_LINUX''' files found in the top level directory of the package. ...
52: ...e MacOS [https://sourceforge.net/projects/sashimi/files/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v7.0...
86: ...ary - converter of SEQUEST and TurboSEQUEST *.out files into a single HTML-SUMMARY file ready for use wit...
93: ...les to SEQUEST dta, MASCOT mgf, and Micromass pkl files - TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11616 bytes)
3: ...s of TPP, please see the README and INSTALL_LINUX files found in source code distribution for instruction...
183: [Files]
188: Choose target directory for downloaded files
189: [Add Files] Go to the top level /local/data
198: [Files] - Software:ReAdW (1604 bytes)
1: '''ReAdW: Thermo Xcalibur .raw files to mzXML converter'''
6: ...ram to convert Xcalibur native acquisition (.RAW) files to [[Formats:mzXML|mzXML]]. The program '''requir...
11: ...d at the [http://sourceforge.net/projects/sashimi/files/ Sashimi SourceForge release page]]
23: ...file release: [http://sourceforge.net/project/showfiles.php?group_id=69281&package_id=68160] - Software:mzStar (1909 bytes)
21: ...hich must be the same version used to produce the files you wish to convert.
29: ...load from the [http://sourceforge.net/project/showfiles.php?group_id=69281&package_id=228578 mzStar Sashi... - TPP:Example data analysis (2562 bytes)
16: ...inZip or a similar application extract all of the files in the compressed archive file to the current dir...
17: ...tpub\wwwroot\ISB\data\raft</b> that contains many files.
25: ...e(s) to convert to pepXML"'', click on the ''"Add Files"'' button.[[Image:Petunia_raft.jpg|thumb|right]]
27: ## Select all HTML files in this directory and click on the '''Select''' b...
28: ...y Sequest Parameters File"'', click on the ''"Add Files"'' button - TPP:Using Petunia (4157 bytes)
23: === How to change the location of the data files ===
26: ...httpd.conf''' file; typically under '''C:\Program Files\Apache Software Foundation\Apache2.2\conf\'''
52: ... may also find Petunia in '''Start → Program Files → TPP → TPP Web Tools'''.
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