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- TPP:Developer Documentation (23931 bytes)
82: ====Edit the src/Makefile.incl file====
148: edit the active 'httpd.conf' file. Add the following ...
557: ==Credits== - TPP:Installing on Mac OSX (12870 bytes)
57: ====edit httpd.conf====
191: ...ions of fink, some report that it is necessary to edit the boost info file before installing with fink t...
230: ===edit src/Makefile.incl according to Linux README===
234: ===edit src/Makefile===
316: ===edit perl scripts=== - TPP Tutorial v1 (43187 bytes)
64: ...ver the DOS shell window bar, right click, select edit and then select paste.
210: ...params file in the directory Tutorial with a text editor'') - Expert search and TPP usage (12929 bytes)
39: # edit tandem.params to include the modifications, targe...
102: # copy a generic search parameter file and edit to suit your data
113: Finally, you may edit the resulting parameters file if you wish: - Building Peptide Atlas (26978 bytes)
8: ...e to <your_build>_recipe.notes, follow along, and edit as needed for your build.
66: ...$PIPELINE/run_scripts/run_<name-of-build>.csh and edit. This script ultimately calls $PIPELINE/run_scrip...
137: Edit the run script to execute steps 02 through 08, th... - TPP Tandem search (19915 bytes)
109: '''Edit the file C:\Inetpub\wwwroot\ISB\data\Tandem_Tutor... - Installing and building TPP on Windows (1942 bytes)
40: where the installer script expects, or edit the installer file - Alt NxST search strategy (1763 bytes)
21: # Edit database to point at modified db - Processing glycopeptide data (6720 bytes)
46: # Edit sequest.params file, which has static mass mod fo...
47: # Edit database to point at modified db
85: # Edit tandem.params file to add a modification mass of ...
87: # Edit tandem.params to point at modified db
90: # Make a copy of runtandemsearch and edit it so that it doesn't - Software:RemoteConvert (4181 bytes)
71: 4.Run Registry Editor (start|run|regedit) and locate the
74: a. From the Edit menu, click New Key. Type the following
79: From the Edit menu, click New Value. Type the following
85: From the Edit menu, click New Value. Type the following
90: d. Close Registry Editor. - TPP:Building Windows-native binaries with Mingw (3414 bytes)
73: where the installer script expects, or edit the installer file - TPP Tutorial v2 (15736 bytes)
92: ...are only two files selected for analysis; you can edit the selections using the checkboxes and ''Remove'...
113: ...here are two files selected for analysis; you can edit the selections using the checkboxes and ''Remove'...
114: ...ub/wwwroot/ISB/data/demo2009'''. You may have to edit out part of the default value that is first shown...
124: ...e is only one file selected for analysis; you can edit the selections using the checkboxes and ''Remove'...
147: ...e is only one file selected for analysis; you can edit the selections using the checkboxes and ''Remove'... - Using SBEAMS (6046 bytes)
21: Edit two tables using Excel, in $SBEAMS/lib/conf/Pepti...
41: * Edit those files to include only your new stuff. For l...
42: If you don't edit, no huge speed issue.
83: -- edit table in table_columns file (or whatever) - Custom digest site (3924 bytes)
5: ...PP on linux. They also assume you are comfortable editing C code. Both are a pre-requisites for these in...
16: ...ticEnzymeFactory.cxx''' using your favourite file editor.
25: * Next, edit the function called '''void ProteolyticEnzymeFact...
32: * Now edit the function called '''ProteolyticEnzyme* Proteol...
49: ...'src/Visualization/xinteract/xinteract.cxx''' for editing - TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (12202 bytes)
40: Before running the make all command, I needed to edit this file:
130: ... finder window, you can open the file with a text editor)
145: ....' and manually open the 'tpp_gui.pl' with a text editor)
185: ...he TPP. However, in the next file you're about to edit, you'll see the 'thegpm' folder a few times, so i...
187: ...at is found at the top of the window (next to the edit button). - TPP:NovorIntegration (2188 bytes)
8: ...launched from the interface, including ability to edit the parameters file. The results can be converte...
21: ...If you get a Java language error, you may need to edit the ''Apache'' configuration file shipped with TP...
25: == Editing parameters ==
26: ... can edit ''Novor'' parameters files using a text editor or in ''Petunia'' -- just make sure that the fi... - TPPDev:ReleaseChecklist (1043 bytes)
11: ...e notes wiki page on tools.proteomecenter.org and edit appropriately - TPP:4.5.0 SVN Log (242349 bytes)
3190: ...lease of X!Tandem, for comparison purposes, don't edit this, and don't expect it to compile.
3423: Added NIGMS logo and credits; replacing NHLBI's - TPP Tutorial (17174 bytes)
99: ...are only two files selected for analysis; you can edit the selections using the checkboxes and ''Remove'...
124: ...here are two files selected for analysis; you can edit the selections using the checkboxes and ''Remove'...
125: ...netpub/wwwroot/ISB/data/demo'''. You may have to edit out part of the default value that is first shown...
135: ...e is only one file selected for analysis; you can edit the selections using the checkboxes and ''Remove'...
157: ...e is only one file selected for analysis; you can edit the selections using the checkboxes and ''Remove'... - TPP:4.7.0 SVN Log (41695 bytes)
29: [Petunia] Added utility to edit Tandem parameters files:
66: ...ated parameters and non-existent default files in edit Tandem params page; also added link to top-level ...
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