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- TPP:Developer Documentation (23931 bytes)
65: ... following C libraries. These libraries are very common on linux distributions. Make - TPP:7.0.0 Release Notes (6884 bytes)
18: * Add 'most common' link to reach those mods more quickly; add link ... - Software:PeptideProphet (1728 bytes)
8: ...of various experimental procedures and serve as a common standard by which the results of different experi... - TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11616 bytes)
70: ... can change 10401 to 80 if you want the UI on the common port 80 instead. - Software:PeptideSieve (6357 bytes)
10: ...re most likely to be proteotypic for each of four common experimental designs. - Formats:pepXML (2274 bytes)
1: ... of MS/MS scans. pepXML is intended to provide a common data output format for many different MS/MS searc... - Formats:mzXML (9722 bytes)
103: ... a general purpose converter, converting from all common raw formats into both mzML and mzXML. Here is a [...
130: ...Smith R, Taylor CF, Zhu W, Aebersold R. (2004) "A Common Open Representation of Mass Spectrometry Data and... - TPP:Installing on Ubuntu 7.04 (9446 bytes)
226: LogFormat "%h %l %u %t \"%r\" %>s %b" common
232: CustomLog logs/tpp_access_log common
254: # directory for tpp's html resources (css, js, images, etc) - Software:SpectraST (70083 bytes)
7: ...with a proteolytic enzyme (trypsin being the most common) to yield peptides that are amenable to LC-MS/MS ...
11: ...ibrary for the best match. This approach has been commonly employed for mass spectrometric analysis of sma...
21: ...ies, neutral losses from fragments, and various uncommon or even unknown fragments, to determine the best ...
178: <code>spectrast -cNcommon -cJI dataset1.splib dataset2.splib</code>
180: ... that are seen in both files in the library <code>common.splib</code>. - Spectrast.params (3605 bytes)
2: ### COMMON OPTIONS ##############################
84: ...le ICAT datasets - an impurity peak at 515.3Th is common for these datasets. - Spectrast create.params (4398 bytes)
2: ### COMMON OPTIONS ############################## - TPP Tutorial v1 (43187 bytes)
258: ...of various experimental procedures and serve as a common standard by which the results of different experi...
323: ...see an example of a search with a XCorr below the common threshold of 2.0 but with a probability of 0.88. ... - Software:SuperHirn (11737 bytes)
113: |retention time window || RT window to search for common MS1 feature across LC-MS runs before the alignmen...
115: ...mass / charge window || Mass window to search for common MS1 feature across LC-MS runs before the alignmen... - Glyco-peptide (2495 bytes)
50: ... list of peptides from surface proteins, proposes common export format. - Software:TPP-MaRiMba (11021 bytes)
14: ...ch distributes SpectraST-compatible libraries for common NIST databases (http://www.peptideatlas.org/specl... - NewGlycoPage (2495 bytes)
50: ... list of peptides from surface proteins, proposes common export format. - TPP:4.2.0 Release Notes (4364 bytes)
62: **Extending MAX_CHARGE to 7 (common in ETD data), charge must be known first - Software:Corra (2308 bytes)
3: ...lysis tools, and integrate them, seamlessly, with common statistical packages to allow for better comparis... - TPP 4.2.1: Installing on Ubuntu 9.04 (4386 bytes)
72: LogFormat "%h %l %u %t \"%r\" %>s %b" common
78: CustomLog /var/log/tpp/tpp_access_log common
119: # directory for tpp's html resources (css, js, images, etc)
142: ... AddHandler default-handler .jpg .png .css .ico .gif - TPP:Building Windows-native binaries with Visual Studio 2005 (3001 bytes)
37: ...evel solution file for everything, as we've added common settings and inter-project dependencies.
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