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- PABST peptide examples (63,150 views)
- Terry's blog (62,811 views)
- TPP:4.7.1 Release Notes (62,356 views)
- Software:mzWiff (61,787 views)
- TPP:4.6.2 Release Notes (61,579 views)
- Software:RAMP (59,555 views)
- Software:Prequips:Inclusion List Builder (59,124 views)
- Software:MzXML2Search (58,317 views)
- Software:msBID (56,681 views)
- Prequips:Eclipse Setup (56,674 views)
- Software:Pep3D (53,491 views)
- Software:ASAPRatio (53,160 views)
- Software:trapper (52,021 views)
- Software:TPP-MaRiMba (50,912 views)
- Software:mzBruker (50,833 views)
- TPP:4.5.0 Release Notes (50,083 views)
- Software:readmzXML (49,795 views)
- TPP:Documentation (48,307 views)
- Software:Firegoose, Gaggle, and PIPE (48,033 views)
- TPP 4.5.2: Installing on Ubuntu 10.04.3 (45,559 views)
- TPP 5.2.0: Installing on Ubuntu 18.04 LTS (44,627 views)
- Software:CompassXport (43,056 views)
- TPP:4.6.3 Release Notes (42,575 views)
- TPP:6.0.0 Release Notes (41,552 views)
- Software:XPRESS (40,808 views)
- TPP:Example data analysis (39,359 views)
- TPP:5.0.0 Release Notes (38,517 views)
- Spectrast.params (38,401 views)
- TPP:Supported Search Engines (37,895 views)
- Software:Mayu (37,580 views)
- TPP:4.6.0 Release Notes (37,267 views)
- Software:Prequips (36,882 views)
- TPP 4.3.1: Installing on Ubuntu 10.04 (36,384 views)
- GetTransitionsAPI (35,852 views)
- Software:ProbID (35,642 views)
- TPP:Building Windows-native binaries with Mingw (34,402 views)
- Software:Out2XML (34,256 views)
- Software:SWATHProphet (34,099 views)
- Developer: Boost CPP libraries (33,864 views)
- TPP:5.1.0 Release Notes (32,634 views)
- Software:Tandem2XML (32,476 views)
- Software:QualScore (31,312 views)
- TPP AMZTPP:PetuniaTutorial (30,982 views)
- Recipe for generating proteotypic peptides for example database (30,950 views)
- Linux Installation Guides (30,896 views)
- Software:Mascot2XML (30,669 views)
- Software:JRAP (30,313 views)
- PABST (30,130 views)
- Processing glycopeptide data (30,070 views)
- Glyco-peptide TODO list (29,920 views)

