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- Software:RAMP (51,503 views)
- TPP:4.7.1 Release Notes (51,403 views)
- Software:MzXML2Search (51,007 views)
- Software:Prequips:Inclusion List Builder (50,880 views)
- Terry's blog (50,375 views)
- Software:ASAPRatio (48,868 views)
- TPP:4.6.2 Release Notes (48,140 views)
- Prequips:Eclipse Setup (47,662 views)
- Software:msBID (47,344 views)
- Software:Pep3D (46,842 views)
- Software:readmzXML (46,295 views)
- Software:mzBruker (45,962 views)
- Software:trapper (44,876 views)
- Software:TPP-MaRiMba (43,702 views)
- Running the TPP docker image (42,342 views)
- Software:Firegoose, Gaggle, and PIPE (41,831 views)
- TPP:Documentation (41,179 views)
- TPP 4.5.2: Installing on Ubuntu 10.04.3 (40,157 views)
- TPP:4.5.0 Release Notes (39,316 views)
- Software:XPRESS (37,634 views)
- Spectrast.params (36,300 views)
- TPP:Example data analysis (35,465 views)
- TPP 5.2.0: Installing on Ubuntu 18.04 LTS (35,170 views)
- TPP:4.6.3 Release Notes (34,026 views)
- Software:CompassXport (33,514 views)
- TPP:Supported Search Engines (33,425 views)
- Software:Mayu (32,386 views)
- Software:ProbID (31,156 views)
- TPP 4.3.1: Installing on Ubuntu 10.04 (30,596 views)
- TPP:Building Windows-native binaries with Mingw (30,383 views)
- TPP:4.6.0 Release Notes (30,370 views)
- Developer: Boost CPP libraries (30,192 views)
- TPP:5.0.0 Release Notes (30,097 views)
- Software:Out2XML (29,825 views)
- Software:Tandem2XML (29,221 views)
- Software:Mascot2XML (28,599 views)
- GetTransitionsAPI (28,289 views)
- Software:Prequips (28,086 views)
- TPP:5.1.0 Release Notes (27,665 views)
- Software:SWATHProphet (27,109 views)
- Recipe for generating proteotypic peptides for example database (26,937 views)
- Software:QualScore (26,788 views)
- Software:Petunia (26,541 views)
- Software:JRAP (26,481 views)
- TPP:Installing on Ubuntu 7.04 (26,390 views)
- TPP:6.0.0 Release Notes (26,083 views)
- Software:SBEAMS (25,854 views)
- Software:SpecArray (25,352 views)
- PABST (24,986 views)
- Glyco-peptide TODO list (24,866 views)