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- PeptideAtlas:Chromosomal coverage (71,055 views)
- PABST peptide examples (69,849 views)
- TPP:4.7.1 Release Notes (69,069 views)
- Software:PeptideProphet (67,059 views)
- Software:Prequips:Inclusion List Builder (66,309 views)
- Software:RAMP (65,065 views)
- Software:mzWiff (64,923 views)
- Prequips:Eclipse Setup (62,834 views)
- Software:MzXML2Search (62,634 views)
- Software:msBID (62,504 views)
- Software:Pep3D (57,843 views)
- TPP:4.5.0 Release Notes (57,288 views)
- Software:TPP-MaRiMba (56,432 views)
- Software:ASAPRatio (56,223 views)
- Software:trapper (55,916 views)
- Software:mzBruker (54,606 views)
- TPP:Documentation (53,068 views)
- Software:readmzXML (52,077 views)
- Software:Firegoose, Gaggle, and PIPE (51,514 views)
- TPP 5.2.0: Installing on Ubuntu 18.04 LTS (50,872 views)
- TPP:6.0.0 Release Notes (49,622 views)
- TPP 4.5.2: Installing on Ubuntu 10.04.3 (49,365 views)
- TPP:4.6.3 Release Notes (48,169 views)
- Software:CompassXport (46,358 views)
- TPP:5.0.0 Release Notes (43,454 views)
- Software:XPRESS (43,111 views)
- TPP:Example data analysis (42,292 views)
- Software:Prequips (41,923 views)
- TPP:4.6.0 Release Notes (41,620 views)
- TPP:Supported Search Engines (41,121 views)
- Software:Mayu (40,888 views)
- GetTransitionsAPI (40,590 views)
- Spectrast.params (39,771 views)
- TPP 4.3.1: Installing on Ubuntu 10.04 (39,566 views)
- Software:ProbID (38,637 views)
- Software:SWATHProphet (37,648 views)
- TPP:Building Windows-native binaries with Mingw (37,612 views)
- TPP:5.1.0 Release Notes (37,139 views)
- Developer: Boost CPP libraries (36,732 views)
- Software:Out2XML (36,626 views)
- TPP AMZTPP:PetuniaTutorial (35,793 views)
- Software:Tandem2XML (34,655 views)
- Linux Installation Guides (34,438 views)
- Software:QualScore (34,147 views)
- Recipe for generating proteotypic peptides for example database (34,008 views)
- Processing glycopeptide data (33,937 views)
- PABST (33,281 views)
- Software:JRAP (32,797 views)
- Software:PeptideSieve:Build (32,591 views)
- Glyco-peptide TODO list (32,332 views)

