Glyco-peptide TODO list

From SPCTools

Revision as of 20:58, 27 August 2008 Dcampbel (Talk | contribs) ← Previous diff		Current revision Dcampbel (Talk | contribs)
Line 5:		Line 5:
	* Organize Hamid Data [done]		* Organize Hamid Data [done]
	* Interact Hamid Data [done]		* Interact Hamid Data [done]
-	* Organize Safia Data	+	* Organize Safia Data [done]
-	* Interact Safia Data	+
-	* Organize Yong Data [pending file paths]	+	* re-search Safia Data [done]
-	* Interact Yong Data	+	* Interact Safia Data [done]
-	* Organize Kelly Data	+	* Organize Yong Data [done]
-	* Interact Kelly Data	+	* Interact Yong Data [done]
-	* re-write UniPep/Human GlycoPeptideAtlas export script using B. Wollscheid format	+	* Organize Kelly Data [done]
-	* Enter sample information into PA	+	* Interact Kelly Data [done]
-	* Create new Human Glyco build for PA	+	* re-write UniPep/Human GlycoPeptideAtlas export script using B. Wollscheid format [done]
-	* Run export script	+	* Enter sample information into PA [done]
-	* Send list to Bernd	+	* Create new Human Glyco build for PA [done]
		+
		+	(optional)
		+	* Add RuthH data to mouse glyco atlas [defer]
		+	* Export peptides; look for human orthologs [defer]
		+
		+
		+	* Generate build [done]
		+	* Load build (optional) [defer]
		+	* Run export script [done]
		+
		+	* Send list to Bernd [done]
	Eric		Eric
	* Organize JWatts data [done]		* Organize JWatts data [done]
-	* Search JWatts data	+	* Search JWatts data [done]
	Bernd W		Bernd W

---

Current revision

This page shows project tasks and progress (Back to main Glyco-peptide project page)

Dave

• Email data producers [done]
• Organize Hamid Data [done]
• Interact Hamid Data [done]
• Organize Safia Data [done]

• re-search Safia Data [done]
• Interact Safia Data [done]
• Organize Yong Data [done]
• Interact Yong Data [done]
• Organize Kelly Data [done]
• Interact Kelly Data [done]
• re-write UniPep/Human GlycoPeptideAtlas export script using B. Wollscheid format [done]
• Enter sample information into PA [done]
• Create new Human Glyco build for PA [done]

(optional)

• Add RuthH data to mouse glyco atlas [defer]
• Export peptides; look for human orthologs [defer]

• Generate build [done]
• Load build (optional) [defer]
• Run export script [done]

• Send list to Bernd [done]

Eric

• Organize JWatts data [done]
• Search JWatts data [done]

Bernd W

• Generate surface protein list [done]
• Merge lists
• Filter master list

Jingchun

• Generate theoretical list from cancer biomarker candidates [done]

Paola

• Prioritize list
• Order peptides