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  1. TPP Tutorial v1 (43187 bytes)
    3: ...mpler) tutorial that you may want to follow, at [[TPP_Tutorial]].</span>
    38: ...es the need to work at the command line, but this section is included in the tutorial because TPP can be ru...
    131: ...zXML format. These steps are covered in the last section - Beyond this Tutorial.
    182: ... under the ‘Specify Sequest Parameters File’ section.'''
    192: ... of previous commands" link in the Command Status section.'''
  2. TPP Tandem search (19915 bytes)
    6: ...xtends and uses some material from this earlier [[TPP_Tutorial | TPP Tutorial]].
    12: ... from this [[TPP_Tutorial | TPP Tutorial]]. The [[TPP_Tutorial | TPP Tutorial]] begins with passing the results ...
    104: ...c1a?lnk=gst&q=_default_input_location_#ba7620b7fef22c1a bug] in TPP 4.0.2 regarding the _DEFAULT_INPU...
    259: ...orial#PepXML_Viewer | TPP Tutorial (PepXML Viewer section)]], you might notice that some of the columns are...
    284: The subsequent analysis is covered in the [[TPP_Tutorial#Peptide_Level_Analysis | TPP tutorial]] and will ...
  3. TPP Tutorial v2 (15736 bytes)
    1: ...mpler) tutorial that you may want to follow, at [[TPP_Tutorial]].</span>
    38: ... Click on the '''Add Files''' button in the first section; the File Chooser window will open.
    73: * Under the ''SpectraST Tools'' section of the navigation menu, select the '''Download Sp...
    80: * In section 1, select the two mzML data files under ''demo200...
    81: * For section 2, select the '''NIST_yeast_IT_v2.0_2008-07-11.sp...

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