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- Software:ReAdW (1604 bytes)
1: '''ReAdW: Thermo Xcalibur .raw files to mzXML converter'''
2: [[image:ReAdW.png|thumb|right]]
6: ...the Xcalibur software suite; you must obtain this software from ThermoFinnigan.
11: ReAdW version 4.3.1 was released on September 9, 2009. ...
14: ...ll only work under Windows with Thermo's XCalibur software installed.
Page text matches
- Software:Overview (3074 bytes)
1: ...cs tools, many of which are integrated into the [[Software:TPP|TPP]] project.
5: '''Please see the [[Software:TPP|TPP page]] for descriptions of the pipeline a...
7: The TPP software distribution integrates the following programs:
9: ...mary]], [[Software:MzXML2Search|MzXML2Search]], [[Software:MsXML2Other|MsXML2Other]],
10: [[Software:readmzXML|readmzXML]], [[Software:mzStar|mzStar]] - Software:TPP (8928 bytes)
8: ...p://tools.proteomecenter.org/wiki/index.php?title=Software:ASAPRatio]]
9: ...p://tools.proteomecenter.org/wiki/index.php?title=Software:XPRESS]]
10: ...p://tools.proteomecenter.org/wiki/index.php?title=Software:Libra]]
11: ...p://tools.proteomecenter.org/wiki/index.php?title=Software:SBEAMS]]
14: ...p://tools.proteomecenter.org/wiki/index.php?title=Software:ProteinProphet]] - Software:ReAdW (1604 bytes)
1: '''ReAdW: Thermo Xcalibur .raw files to mzXML converter'''
2: [[image:ReAdW.png|thumb|right]]
6: ...the Xcalibur software suite; you must obtain this software from ThermoFinnigan.
11: ReAdW version 4.3.1 was released on September 9, 2009. ...
14: ...ll only work under Windows with Thermo's XCalibur software installed. - Software:massWolf (1763 bytes)
4: ...brary, which is installed along with the MassLynx software suite; we cannot distribute this library.
10: | The mzXML conversion tools ReAdW, massWolf, trapper, and mzWiff and been deprecate...
16: Windows only. Requires installation of MassLynx software on the same computer.
18: ==Getting the software==
20: ...lf download to match the version of your MassLynx software (4.0 or 4.1).''' - Formats:mzXML (9722 bytes)
10: ...'Compatible Mass-Spectrometer Instrument-Specific Software and File Formats:'''
15: ! raw file vendor !! instrument acquisition software !! raw file type !! raw-to-mzXML converter !! SPC...
17: ...o (Bruker supported) || || refer to vendor; see [[Software:CompassXport|CompassXport]] page
19: ...release: 4.3.0, August 2009; see [[Software:ReAdW|ReAdW]] page
21: ...ing || offical release: 4.3.0, August 2009; see [[Software:massWolf|wolf]] page - TPP Tutorial v1 (43187 bytes)
22: ...Internet Explorer is required. Including the TPP software, the tutorial requires about 900MB of hard drive ...
23: ...nt independent data formats used by data analysis software like TPP and data repositories. mzXML was develop...
30: ...eering. Also, this tutorial does not require any software or data that is not easily available on the web a...
111: “The Application of New Software Tools to Quantitative Protein Profiling Via Isoto...
161: ...al is instrument independent and does not require software beyond TPP. The SEQUEST Search results are in th... - TPP:Related Tools (6244 bytes)
2: The TPP has many relationships with other software programs and projects. Some of these, like the T...
4: ...=Compatible Mass-Spectrometer Instrument-Specific Software and File Formats==
10: ...r an overview of compatible formats and converter software.
16: ! Vendor !! Instrument Acquisition Software !! File Type !! TPP mzXML converter
18: ...00.html XCalibur ]|| .RAW file|| [[Software:ReAdW|ReAdW]] - Software:mzWiff (1730 bytes)
5: | The mzXML conversion tools ReAdW, massWolf, trapper, and mzWiff and been deprecate...
10: ...his software from your vendor. mzWiff replaces [[Software:mzStar|mzStar]].
13: ... will only work under Windows '''with the Analyst software installed'''.
15: ==Getting the software==
18: '''This software is included in the current [[Software:TPP|TPP]] distribution.''' - Software:trapper (1991 bytes)
11: | The mzXML conversion tools ReAdW, massWolf, trapper, and mzWiff and been deprecate...
13: The current version of the trapper software is 4.3.0, released August 7, 2009
16: ...will only work under Windows with Agilent's MHDAC software installed. The MHDAC is included and installed w...
19: ==Getting the software==
20: ...software will be included in the upcoming 4.1.0 [[Software:TPP|TPP]] distribution.''' - TPP:4.1 Release Notes (1819 bytes)
26: *ReAdW: calls msconvert for mzML output
31: ...erver location etc don’t get blown away on each software update. - Software:RemoteConvert (4181 bytes)
5: ...vendor libraries from different manufacture, this software will enable you converting your raw files in you ...
8: The following is a list of software need to be installed on window machine before yo...
12: ...e type !! Raw-to-mzXML/mzML converter !! Required Software
14: ...?title=Software:ReAdW ReAdw] || Thermo's XCalibur software
16: ...e=Software:massWolf massWolf] || Waters' MassLynx software - TPP:4.2.1 Release Notes (3668 bytes)
7: ...f you have a previously installed version of this software, uninstall the older version (from the start menu...
12: ===ReAdW=== - TPP:4.3.0 Release Notes (13496 bytes)
6: ...nstalls and configures the TPP and other required software (such as a webserver). For advanced users who ne...
65: * added charge state prediction software
73: Mayu: adding Lukas Reiter's software to calculate decoy-estimated PSM, peptide, and pr...
75: ...p://tools.proteomecenter.org/wiki/index.php?title=Software:Mayu
153: == ReAdW == - Raw MS file conversion (894 bytes)
1: There are several pieces of software to convert raw MS files to XML format (mzXML or m...
14: # Convert RAW files to mzXML using ReAdW with centroiding - Msconvert Capabilities (15313 bytes)
68: ... ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the original Perl by A. Keller (TPP v4.3 J...
101: ... ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the original Perl by A. Keller (TPP v4.3 J...
204: raw-to-mzXML converter: ReAdW
205: <h2>ReAdW</h2>
207: Conversion: using remoteconvert.pl --convertWith readw, file successfully converted. - TPP:4.4.0 Release Notes (31941 bytes)
5: ...nstalls and configures the TPP and other required software (such as a webserver). For advanced users who ne...
12: * The mzXML conversion tools ReAdW, massWolf, trapper, and mzWiff and been deprecate...
183: initial commit of "PepC: Proteomics software for identifying differentially expressed proteins...
540: ...Peak m/z and intensity bug for centroided data in ReAdW for Thermo Interface.
546: == Getting the TPP Software == - TPP:6.0.0 Release Notes (38799 bytes)
1: ...nstalls and configures the TPP and other required software (such as a web server). For advanced users who n...
387: ...erences to long-deprecated raw->mzXML converters (ReAdW, mzWiff, etc)
579: ** Updating software to work with the newer mzIMLTools API
655: = Getting the TPP Software =
664: * For guides to installing and using our software, please see our wiki:
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