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- Software:TPP-MaRiMba (11021 bytes)
1: '''TPP-MaRiMba: Branch of TPP containing MaRiMba, a tool for the creation of customized MRM lists ...
3: ... with isotopic labeling strategies such as SILAC. MaRiMba outputs the final MRM list to a text file conveni...
8: ===MaRiMba Workflow===
10: ...tomization. The steps of MRM list generation with MaRiMba are described below.
14: ...is available in the TPP software suite with which MaRiMba is packaged.
Page text matches
- Software:SpectraST (70083 bytes)
3: ... installer is at [http://tools.proteomecenter.org/software.php].
9: ...e tremendous improvement in computer hardware and software over the past decade, this step often remains the...
85: ...omponent of the Trans Proteomic Pipeline suite of software. Although it can be used alone without other TPP ...
101: ...s installed, SpectraST can also be run from the [[Software:Petunia|Petunia]] web interface, with limited opt...
155: ...Software:PeptideProphet|PeptideProphet]] and/or [[Software:iProphet|iProphet]], such that all the search hit... - Software:TPP-MaRiMba (11021 bytes)
1: '''TPP-MaRiMba: Branch of TPP containing MaRiMba, a tool for the creation of customized MRM lists ...
3: ... with isotopic labeling strategies such as SILAC. MaRiMba outputs the final MRM list to a text file conveni...
8: ===MaRiMba Workflow===
10: ...tomization. The steps of MRM list generation with MaRiMba are described below.
14: ...is available in the TPP software suite with which MaRiMba is packaged. - TPP:Authors and Contributors (3295 bytes)
1: The [[Software:TPP|Trans-Proteomic Pipeline (TPP)]] is a collabo...
19: * Carly Holstein: MaRiMba project: creation of MRM lists from spectral libr...
39: * LabKey Software: Optimization, TPP testing - TPP:4.4.0 Release Notes (31941 bytes)
5: ...nstalls and configures the TPP and other required software (such as a webserver). For advanced users who ne...
183: initial commit of "PepC: Proteomics software for identifying differentially expressed proteins...
514: === Full Integration of MaRiMba ===
516: * Completion of the full integration of MaRiMba into the TPP.
546: == Getting the TPP Software == - TPP:5.0.0 SVN Log (143410 bytes)
2355: [Petunia] Remove Marimba! Also clarified idconvert text and rearranged ma...
2452: [Marimba] REMOVE IT!
2522: - Provide more feedback when running command (software name, version, and file being analyzed) as well a... - TPP:5.0.0 Release Notes (17167 bytes)
1: ...nstalls and configures the TPP and other required software (such as a web server). For advanced users who n...
17: ** allows for user-configurable software and data locations
20: * New major software components:
91: ** Removed MaRiMba interface
163: ** Provide more feedback when running command (software name, version, and file being analyzed) as well a...
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