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- Debugging:Understanding XSL-Generating Code in Perl (1339 bytes)
5: ... is a standard perl variable, subsituted into the print statement. Another is an XSL variable, for which...
6: print XSL '<A TARGET="Win1" HREF="' . $CGI_HOME . 'ASA...
11: print XSL '<xsl:template match="pepx:msms_run_summary"... - Debugging:Working with boost::shared ptr (693 bytes)
10: >call (o.get())->print() - TPP:Installing on Mac OSX (12870 bytes)
328: //printf("<img src=\"%s\"/>\n", pngFile);
332: printf("<img src=\"%s\"/>\n", pStr);
393: print crypt($ARGV[0], "isbTPPspc") . "\n"; - Software:SpectraST (70083 bytes)
30: * Biological sample fingerprinting by spectral archives ''(Contributor: Dr. Wengu...
146: ...ted. Some useful information about the library is printed at the beginning of the <code>bar.sptxt</code> ...
277: ...al libraries, such as for biological sample fingerprinting (see below). Please note that results obtained...
279: ==== Biological Sample Fingerprinting by Spectral Archives ====
281: ... archives can be used for biological sample fingerprinting. As of version 5.0, upon searching such librar... - Spectrast create.params (4398 bytes)
28: # Print MRM transition table
29: printMRMTable = - TPP:Installing on Ubuntu 8.10 (3812 bytes)
23: $ dpkg -l libboost* | grep ii | gawk '{print $2"\t"$3}' - Building Peptide Atlas (26978 bytes)
118: awk '{print $11}' PeptideAtlasInput_sorted.PAidentlist | sort...
194: ...earches the DB without calling blast and, at end, prints "N peptides with/without a match".
209: ====Step04: Count mapped peptides; print in different format====
210: ...ounts the number of entries for each peptide, and prints out another file with the same number of lines. ...
223: ...ks up chromosomal coordinates for each entry, and prints into a new file. Calls pipeline script with --BL... - TPP:4.2.0 Release Notes (4364 bytes)
68: ...abled when PROTLEN option is used) , for IPROPHET print alternative peptide forms as indistinguishable_pe... - PABST peptide examples (6378 bytes)
25: -d, --default_config prints an example config file with defaults in CWD,
27: file. Exits after printing.
30: -s, --show_builds Print info about builds in db
37: -t, --tsv_file print output to specified file rather than stdout
42: -h, --help Print usage - TPP:4.3.0 Release Notes (13496 bytes)
77: ...ass spectrometry", http://www.mcponline.org/cgi/reprint/M900317-MCP200v1
149: * print out more precision for precursor m/z; remove paus...
196: * Add MRM table format SHOWINFO which prints additional info about each transition (including... - Recipe for generating proteotypic peptides for example database (10354 bytes)
90: --quiet Set flag to print nothing at all except errors
94: --help print this usage and exit.
124: -h, --help Print this usage and exit - TPP:4.4.0 Release Notes (31941 bytes)
63: * Use dhtml to print/display messages (also simplify error messages so...
440: ... Tuning max reward parameters for ACCMASS model. Print warning if not decoys are found. Count decoys and...
510: * Added -N option to print out top N most intense peaks in a spectrum. Need... - TPP:4.5.0 Release Notes (8358 bytes)
106: ...en using commandline generated index which didn't print the queryString so we fake one. - TPP:Installing the Trans-Proteomic Pipeline (TPP) 4.4.0 on Mac OS X 10.6.4 (12202 bytes)
43: Find the lines that print the HTML portion of the Javascript tags (lines 10...
45: printf(" <script type=\"text/javascript\" src=\"/ISB/...
49: printf(" <script type=\"text/javascript\" src=\"/tpp/... - TPP:4.5.0 SVN Log (242349 bytes)
30: ...x bug on commandline generated index which didn't print the queryString so we fake one.
460: [SpectraST] MRM table prints theoretical (not observed), accurate (to 4 decim...
1554: * debug print # visible and not visible messages in queues - TPP:4.6.3 SVN Log (38611 bytes)
144: ...ce for alignment and annotation; By default don't print top hits with zero f-value.
205: warning printed once for each thread.
791: ...ream: if file cannot be opened capture the error, print and exit. - TPP:4.6.3 Release Notes (4087 bytes)
33: ** By default, don't print top hits with zero f-value. - TPP:4.7.0 SVN Log (41695 bytes)
175: [SpectraST] Spectral dataset fingerprinting option
231: [SpectraST] Re-submitting spectral dataset fingerprinting option
337: gcc 4.8 was complaining about fprintf() of a time_t typed variable using
340: unsigned long long and print that out. But we have to use two different
459: PeptideProphetParser: print usage and exit when envoked without arguments. - TPP:4.7.0 Release Notes (9008 bytes)
64: ** print usage and exit when invoked without arguments. - TPP:5.0.0 SVN Log (143410 bytes)
1302: to the client. So every place were we print a "html" like message, the
1306: html page it now prints a message to both stderr and stdout and then
1353: this is going to stdout. A normal fprintf(stderr) however doesn't. Odd
1510: While I really wanted to use an smaller footprint, secure, embedded web server
1974: ...ynamic user selection; added utility function for printing tabs
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