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Article title matches
- Software:Pep3D (1087 bytes)
12: [http://tools.proteomecenter.org/publications/Li-Pep3D.pdf download PDF]
17: [[image:pep3d.jpg]]
Page text matches
- TPP:V5Feedback (11460 bytes)
44: ** pvalue link to interact-pval.png is broken. (look in PValueModel.cxx)
68: * <s>Links are bad in pep3d save as html document. Resulting page has a bad ...
94: ...ctrast/OR20080317_S_SILAC-LH_1-1_01.00417.00417.2.png) Seen when clicking on a spectrum in the pepxmlv... - Software:Overview (3074 bytes)
9: ...tio]], [[Software:Libra|Libra]], [[Software:Pep3D|Pep3D]], [[Software:SpectraST|SpectraST]], [[Software:O...
25: [[Software:Pep3D|Pep3D]]: Visualization tool for viewing MS and MS/MS ru... - TPP:Installing on Mac OSX (12870 bytes)
324: ===modify source code: src/Visualization/Pep3D/cgi_disCidData.c===
325: (to get right path for png images with WEBSERVER_ROOT stripped off)
328: //printf("<img src=\"%s\"/>\n", pngFile);
331: char *pStr = strstr(pngFile, "/tpp");
346: (length $serverRoot) <= (length $local_pngfile) - Software:Pep3D (1087 bytes)
12: [http://tools.proteomecenter.org/publications/Li-Pep3D.pdf download PDF]
17: [[image:pep3d.jpg]] - Software:TPP (8915 bytes)
32: |[[Image:Info.png|middle|left]]
88: [[Software:Pep3D|Pep3D]]: Viewer for LC-MS and LC-MS/MS results. - Software:SpecArray (1001 bytes)
1: [[Image:SpecArray_PeptideArray.png|thumb|right]]
8: ...erate 2D gel type images from LC-MS data (''Note: Pep3D is also integrated into the [[Software:TPP|TPP]]'... - Formats:mzXML (9722 bytes)
106: ===Pep3D===
107: The [[Software:Pep3D|Pep3D]] program, included with the TPP, produces a gel-... - TPP Tutorial v1 (43187 bytes)
158: [[Image:login.png]]
205: [[Image:pepXML.png]]
207: ...L viewer will open. From here you can generate a Pep3D image of the LC/MS data, view the complete SEQUES...
214: ...nt locations where tandem MS were collected. The Pep3D image has interactive control of the display.
216: [[Image:Pep3D.png]] - Software:RAMP (2074 bytes)
13: *[[Software:Pep3D|pep3D]] -RAMP - Terry's blog (18394 bytes)
57: * Use '''Pep3D''' (avail from Petunia) to quickly, visually asse... - TPP Tutorial v2 (15736 bytes)
98: == 7. Visualize LC-MS/MS data using Pep3D ==
100: ''Pep3D'' is a tool for visualizing LC MS data, along wit...
104: ... Pep3D''' button. A new window will launch the ''Pep3D'' viewer.
105: ...(or change to taste) and click on the '''Generate Pep3D Image''' button.
106: ...nter.org/wiki/index.php?title=Image:Pep3D.JPG IMG:Pep3D] - TPP:4.4.0 Release Notes (31941 bytes)
60: === Pep3D === - ReleasePlanning (12743 bytes)
116: ...alue information into the protXML instead of as a PNG
117: ...riting pvalue model data into protXML; will leave png for a trial period''
130: ...alue information into the protXML instead of as a PNG
131: ...ll need to update protXML schema (new elements). PNG will stay for a transitionary period.''
187: * Add some filtering options to Pep3D (specifically: view only +1 ions) - TPP SEWW Demo2012 (29568 bytes)
249: ... Pep3D''' button. A new window will launch the ''Pep3D'' viewer.
250: ...(or change to taste) and click on the '''Generate Pep3D Image''' button.
251: ...ols.proteomecenter.org/wiki/index.php?title=Image:Pep3D.JPG
252: * Click the ''Close'' button for the Pep3D Image and the ''Close'' button for the PepXML vie...
265: ....org/wiki/index.php?title=Image:ASAPRatioProfiles.png IMG:ASAPRatioProfiles] - TPP WISB Demo2012 (16916 bytes)
216: ... Pep3D''' button. A new window will launch the ''Pep3D'' viewer.
217: ...(or change to taste) and click on the '''Generate Pep3D Image''' button.
218: ...ols.proteomecenter.org/wiki/index.php?title=Image:Pep3D.JPG
219: * Click the ''Close'' button for the Pep3D Image and the ''Close'' button for the PepXML vie...
232: ....org/wiki/index.php?title=Image:ASAPRatioProfiles.png IMG:ASAPRatioProfiles] - TPP:4.5.0 SVN Log (242349 bytes)
495: ...es/4-5/trans_proteomic_pipeline/src/Visualization/Pep3D/BasenameParser.cxx
496: .../trans_proteomic_pipeline/src/Visualization/Pep3D/Pep3DParser.cxx
497: .../trans_proteomic_pipeline/src/Visualization/Pep3D/Pep3D_functions.h
498: ...ipeline/src/Visualization/Pep3D/cgi_Pep3D_xml/cgi_Pep3D_xml.cxx
499: ...es/4-5/trans_proteomic_pipeline/src/Visualization/Pep3D/cgi_getCidData.cxx - TPP:4.6.3 SVN Log (38611 bytes)
564: [Pep3D] Stop using old Pep3D spectrum viewer; link to Lorikeet instead.Also re... - TPP:4.6.3 Release Notes (4087 bytes)
42: ** Retired old Pep3D spectrum viewer - TPP Tutorial (17174 bytes)
104: ...mecenter.org/wiki/index.php?title=Image:PepModels.png IMG:PepModels] which shows graphically how succes...
109: == 7. Visualize LC-MS/MS data using Pep3D ==
111: ''Pep3D'' is a tool for visualizing LC MS data, along wit...
115: ... Pep3D''' button. A new window will launch the ''Pep3D'' viewer.
116: ...(or change to taste) and click on the '''Generate Pep3D Image''' button. - TPP:5.0.0 SVN Log (143410 bytes)
183: ...factor: upgrade libarchive archive and add gd and png
262: M Visualization/Pep3D/Pep3D_functions.cpp
593: libpng. Are these commonly installed on systems? If no...
1015: libpng
1379: * fixed issue with links being bad to pep3d image when saving as html
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