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  1. TPP:V5Feedback (11460 bytes)
    19: * <s>Uninstall reports error when tpptray is running and in system tray. Shou...
    36: * Any call to gnuplot.exe results in "Fontconfig error: Cannot load default config file"
    49: ... results in the pepxmlviewer results in a bad url error</s>
    51: ... the top 5 matching peptides results in a bad url error</s>
    92: * <s>Same gnuplot error as before, on pepxmlviewer when viewing peptidepr...
  2. Prequips:Bugs (772 bytes)
    7: *The Motif version produces the following error message: <code><nowiki>Unhandled event loop excep...
    9: ...ibrary [Cairo required] (java.lang.UnsatisfiedLinkError: /local/p2/prequips 0.7/configuration/org.eclipse...
    13: ...ibrary [Cairo required] (java.lang.NoClassDefFoundError)
  3. TPP:Developer Documentation (23931 bytes)
    425: ;w : warning instead of exit with error if instrument types between runs is different
  4. TPP:Windows Cygwin Installation (7499 bytes)
    56: ...code>/usr/sbin/cygserver &</code> -- look for any error messages, should be none unless cygserver is alre...
    57: ...r/sbin/apachectl2 -k start</code> -- look for any error messages, should be none
    58: # if error messages from the last two steps that includes "c...
  5. TPP:Frequently Asked Questions (5647 bytes)
    43: ... and PeptideProphet model is under-predicting the error when compared to the DECOYS
  6. TPP:Installing on Mac OSX (12870 bytes)
    29: ...sed previously installed X11SDK files; if you get errors from Fink regarding X11, reinstall X11SDK.pkg (f...
    164: remember, if you see errors related to X11, reinstall the Apple X11SDK.pkg.
    279: Note: Using /sw/include will cause an error due to a problem in "expat.h". Either load this h...
    281: "-Werror" was removed from the compiler flags since there ...
    372: .../tpp/cgi-bin/check_env.pl in your browser-- if no error, things are looking good.
  7. Software:PeptideProphet (1728 bytes)
    8: ...can achieve much higher sensitivity for any given error rate compared to the results of using conventiona...
  8. Software:ASAPRatio (1791 bytes)
    9: ...r a given protein are collected, their ratios and errors calculated, outlier's are checked for using Dixo...
  9. TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11616 bytes)
    85: ...ting system version, TPP version, and compilation error messages to spctools-discuss and someone can help...
    111: If you get any NOT FOUND errors, then go back to cpan and install them.
    157: If that reload generated an error, you'll need to troubleshoot your configuration. ...
    168: ...ent wrong. If the cause is not apparent, post the error log to the support group for assistance.
    208: isotope_error = 3
  10. TPP:X!Tandem and the TPP (5454 bytes)
    22: ...Tandem data will run through the pipeline without error, results are non-optimal. Also, we do not yet su...
    69: 3. homolog error - Function unknown.
  11. Software:SpectraST (70083 bytes)
    9: ... traditional sequence searching is a challenging, error-prone, and computationally expensive exercise. De...
    235: ...library. These questionable spectra can propagate errors from sequence searching, reduce the discriminati...
  12. TPP Tutorial v1 (43187 bytes)
    258: ...can achieve much higher sensitivity for any given error rate compared to the results of using conventiona...
    277: ...eyond XPRESS in that does background subtraction, error analysis, and provides a criterion for protein pr...
    314: ... the number of peptides assigned and the level of error.
    318: ...ake you to a plot of the expected sensitivity and error rates for various min probability thresholds that...
    401: ...bability above 0.90. '''Click the ‘Sensitivity/Error Info’ button which is located to the right of t...
  13. TPP:4.2.0 Release Notes (4364 bytes)
    29: **more resilient error handling
  14. Software:Corra (2308 bytes)
    3: ...ddition of statistical measures of confidence and error rates. The integration of tools was achieve via A...
  15. TPP 4.2.1: Installing on Ubuntu 9.04 (4386 bytes)
    101: ErrorLog /var/log/apache2/error.log
    103: ...ssible values include: debug, info, notice, warn, error, crit,
  16. TPP Tutorial v2 (15736 bytes)
    95: ... the upper right corner, and for the green curve (error) to hug the lower left corner. The lower pane sho...
  17. TPP:4.3.0 Release Notes (13496 bytes)
    222: * Correct display error for prot xml file generated directly from the web...
    275: * More useful error message when parsing a search result breaks.
    287: * ProteinProphet: fixed a divide-by-zero error caused by use of tab+space instead of space after...
  18. Msconvert Capabilities (15313 bytes)
    11: ...!Tandem search: Tandem Search completed, but with errors
    37: ERROR: two instrument ionisations: NSI and MS_CHIP
    97: ERROR: two instrument ionisations: NSI and MS_CHIP
  19. PeptideSieveRetrainingTutorial (9535 bytes)
    63: ...t a time based on the increase or decrease in the error rate measured using cross validation and any clas...
    70: :::''mlp_feat_sel -pathexp $loc -ferror X1mlp.err.cv -fparam X1mlp.param\''<br/>
    75: :::''-priors_npatterns 0 -debug 0 -verbose 3 -verror 0 \''<br/>
    93: :::''-create -pathexp $loc -ferror X1mlp.err.train -fparam X1mlp.param\''<br/>
    98: :::''-debug 0 -verbose 3 -verror 0 \''<br/>
  20. TPP 4.3.1: Installing on Ubuntu 10.04 (1106 bytes)
    27: * If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Witho...

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