Software:mzStar

From SPCTools

(Difference between revisions)
Jump to: navigation, search
Revision as of 23:46, 9 May 2007
Jtasman (Talk | contribs)
(Description)
← Previous diff
Current revision
Jtasman (Talk | contribs)
(adding svn link)
Line 1: Line 1:
[[image:mzStar.png|thumb|right]] [[image:mzStar.png|thumb|right]]
 +
 +
 +=='''Important note: mzStar retired in favor of mzWiff'''==
 +[[Software:mzWiff|mzWiff]] is the replacement for mzStar, and corrects many bugs and improves speed. Please see the [[Software:mzWiff|mzWiff]] page for more information.
 +
 +
 +=='''Important note: Centroiding bug'''==
 +A major bug has been discovered in the Analyst (ABI/MDS Sciex) to mzXML converter, mzStar. This has resulted in major data loss for data that was centroided with this converter. Currently, we have fixed the problem and recompiled versions for Analyst 1.1 and Analyst 1.4.1 installations (remember, you must download the appropriate converter for your own software.)
 +
 +The Analyst 1.1 version included since the TPP 3.0.3 distrution does not have this bug.
==In a nutshell== ==In a nutshell==
-SCIEX/ABI Analyst (.WIFF) format MS/MS data to [[Formats:mzXML|mzXML]] converter.+SCIEX/ABI Analyst (.WIFF) format MS/MS data to [[Formats:mzXML|mzXML]] converter. '''(RETIRED)'''
==Description== ==Description==
Line 12: Line 22:
==Getting the software== ==Getting the software==
 +
 +'''This software is retired-- see [[Software:mzWiff|mzWiff]]
 +
*see Requirements. *see Requirements.
-'''This software is included in the current [[Software:TPP|TPP]] distribution.''' 
-Additional methods for obtaining the software are:+*Download from the [http://sourceforge.net/project/showfiles.php?group_id=69281&package_id=228578 mzStar Sashimi file release page]
-*Download from the [http://sourceforge.net/project/showfiles.php?group_id=69281&package_id=228578 mzStar Sashimi file release page]: ''Note-- Look in '''both''' 2.4.3 and 2.4.0 releases to find the appropriate match to your version of Analyst software.''+*Browse source code on the Sashimi project (at SourceForge) from last TPP release with mzStar (3.4):[http://sashimi.svn.sourceforge.net/viewvc/sashimi/tags/release_3-4-1/trans_proteomic_pipeline/src/mzXML/converters/mzStar/]
-*Browse [http://sashimi.cvs.sourceforge.net/sashimi/mzStar/ source code] on the Sashimi project (at SourceForge)+

Current revision

Enlarge


Contents

Important note: mzStar retired in favor of mzWiff

mzWiff is the replacement for mzStar, and corrects many bugs and improves speed. Please see the mzWiff page for more information.


Important note: Centroiding bug

A major bug has been discovered in the Analyst (ABI/MDS Sciex) to mzXML converter, mzStar. This has resulted in major data loss for data that was centroided with this converter. Currently, we have fixed the problem and recompiled versions for Analyst 1.1 and Analyst 1.4.1 installations (remember, you must download the appropriate converter for your own software.)

The Analyst 1.1 version included since the TPP 3.0.3 distrution does not have this bug.

In a nutshell

SCIEX/ABI Analyst (.WIFF) format MS/MS data to mzXML converter. (RETIRED)

Description

Visual Basic application to convert data from a SCIEX/ABI Q-STAR instrument into mzXML format. This application is based on a VB library provided by the Analyst software, which is therefore required to be present on the same machine the converter will be used on.

Requirements

This software is Windows-only and requires an installation of the Analyst software on the same computer. The version of mzStar must match the version of Analyst, which must be the same version used to produce the files you wish to convert.

Getting the software

This software is retired-- see mzWiff

  • see Requirements.
Personal tools