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  1. TPP:7.0.0 Release Notes (6764 bytes)
    1: = TPP 7.0.0 ARAFEL Release Notes =
  2. TPP:4.1 Release Notes (1819 bytes)
    1: == TPP 4.1 Release Notes ==
  3. TPP:4.2.0 Release Notes (4364 bytes)
  4. TPP:4.2.1 Release Notes (3668 bytes)
  5. TPP:4.3.0 Release Notes (13496 bytes)
    1: Trans-Proteomic Pipeline (TPP) 4.3.0 release notes
    3: (Changes since the last official release, 4.2.1)
    6: ...e to the Trans-Proteomic Pipeline (TPP) software, release 4.3.0 (4.3 revision). The software is available ...
    47: * updated Windows build notes
    75: * Further notes available at the SPCtools wiki, http://tools.prot...
  6. TPP:4.4.0 Release Notes (31941 bytes)
    1: ...Proteomic Pipeline (TPP) "Vuvuzela" 4.4.0 release notes
    3: (Changes since the last official release, 4.3.1)
    5: ...e to the Trans-Proteomic Pipeline (TPP) software, release 4.4.0 (4.4 revision). The software is available ...
    12: ...sion of this tool has been included with this TPP release.
    159: tidy up notes to match current code
  7. TPP:4.4.1 Release Notes (2746 bytes)
    1: ...Proteomic Pipeline (TPP) "Vuvuzela" 4.4.1 Release Notes'''
    3: ...ne (TPP) software, release 4.4.1 is a maintenance release which addresses a number of issues that have been...
    5: ...elease notes are available at [[TPP:4.4.0_Release_Notes]]''
    32: ..._1.exe) from the Sashimi SourceForge project file release page:
    45: .../sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-4-1"
  8. TPP:4.5.0 Release Notes (8358 bytes)
    1: ...-Proteomic Pipeline (TPP) "Rapture" 4.5.0 Release Notes'''
    3: ...s if you have any questions or problems with this release please let us know on the [http://groups.google.c...
    5: ...elease notes are available at [[TPP:4.6.0_Release_Notes]]''<br>
    6: ...elease notes are available at [[TPP:4.4.1_Release_Notes]]''
    139: ..._0.exe) from the Sashimi SourceForge project file release page:
  9. TPP:4.5.1 Release Notes (4270 bytes)
    2: ...-Proteomic Pipeline (TPP) "Rapture" 4.5.1 Release Notes'''
    4: ...ne (TPP) software, release 4.5.1 is a maintenance release that addresses a number of issues found with 4.5....
    6: ...elease notes are available at [[TPP:4.5.0_Release_Notes]]''
    66: ..._1.exe) from the Sashimi SourceForge project file release page:
    79: .../sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-5-0"
  10. TPP:4.5.2 Release Notes (4692 bytes)
    1: ...-Proteomic Pipeline (TPP) "Rapture" 4.5.2 Release Notes'''
    3: ...ne (TPP) software, release 4.5.2 is a maintenance release that addresses a number of issues found with 4.5....
    5: ...elease notes are available at [[TPP:4.5.1_Release_Notes]]''
    6: ...elease notes are available at [[TPP:4.5.0_Release_Notes]]''
    38: ...ix is only needed until the developers of inspect release a new version that includes these changes.
  11. TPP:4.6.0 Release Notes (4524 bytes)
    1: ...s-Proteomic Pipeline (TPP) "Occupy" 4.6.0 Release Notes'''
    3: ...Pipeline (TPP) software, release 4.6.0 is a minor release of TPP that contains several new features. The s...
    5: ...elease notes are available at [[TPP:4.5.2_Release_Notes]]''
    36: * ''Updated X!Tandem to the latest release: CYCLONE (2011.12.01)''
    80: ..._0.exe) from the Sashimi SourceForge project file release page:
  12. TPP:4.6.1 Release Notes (3640 bytes)
    1: ...ne (TPP) software, release 4.6.1 is a maintenance release of TPP that contains several fixes to 4.6.0. The...
    3: ...elease notes are available at [[TPP:4.6.0_Release_Notes]]''
    46: ..._1.exe) from the Sashimi SourceForge project file release page:
    59: .../sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-6-1"
    63: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...
  13. TPP:4.6.2 Release Notes (2282 bytes)
    3: ...ne (TPP) software, release 4.6.2 is a maintenance release of TPP that contains several fixes to 4.6.1. The...
    5: ...elease notes are available at [[TPP:4.6.1_Release_Notes]]''
    29: ..._2.exe) from the Sashimi SourceForge project file release page:
    42: .../sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-6-2"
    46: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...
  14. TPP:4.6.3 Release Notes (4087 bytes)
    1: ...ne (TPP) software, release 4.6.3 is a maintenance release of TPP that contains changes to 4.6.2. The softw...
    3: ...elease notes are available at [[TPP:4.6.2_Release_Notes]]''
    70: ..._3.exe) from the Sashimi SourceForge project file release page:
    83: ...heckout svn://svn.code.sf.net/p/sashimi/code/tags/release_4-6-3
    86: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...
  15. TPP:4.7.0 Release Notes (9008 bytes)
    2: ...Pipeline (TPP) software, release 4.7.0 is a minor release of TPP that contains changes to 4.6.3. The softw...
    4: ...elease notes are available at [[TPP:4.6.3_Release_Notes]]''
    140: ..._0.exe) from the Sashimi SourceForge project file release page:
    153: ...heckout svn://svn.code.sf.net/p/sashimi/code/tags/release_4-7-0
    156: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...
  16. TPP:4.7.1 Release Notes (5613 bytes)
    2: ...ne (TPP) software, release 4.7.1 is a maintenance release of TPP that contains changes to 4.7.0. The softw...
    4: ...elease notes are available at [[TPP:4.7.0_Release_Notes]]''
    85: ..._1.exe) from the Sashimi SourceForge project file release page:
    99: ...heckout svn://svn.code.sf.net/p/sashimi/code/tags/release_4-7-1
    103: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...
  17. TPP:4.8.0 Release Notes (9645 bytes)
    1: ...Pipeline (TPP) software, release 4.8.0 is a minor release of TPP that contains new features, improvements, ...
    3: ...elease notes are available at [[TPP:4.7.1_Release_Notes]]''
    125: ..._0.exe) from the Sashimi SourceForge project file release page:
    139: ...heckout svn://svn.code.sf.net/p/sashimi/code/tags/release_4-8-0
    145: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...
  18. TPP:5.0.0 Release Notes (17167 bytes)
    1: ...ne (TPP) software, release 5.0.0 is a '''major''' release of TPP that contains new features, improvements, ...
    6: ...elease notes are available at [[TPP:4.8.0_Release_Notes]]''
    329: ....0.exe) from the Sashimi SourceForge project file release page:
    343: ...heckout svn://svn.code.sf.net/p/sashimi/code/tags/release_5-0-0
    350: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...
  19. TPP:5.1.0 Release Notes (19616 bytes)
    1: ...ne (TPP) software, release 5.1.0 is a '''major''' release of TPP that contains new features, improvements, ...
    6: ...elease notes are available at [[TPP:5.0.0_Release_Notes]]''
    99: ...file -- '''Please read the relevant Comet release notes, as some parameters have changed behavior'''
    367: * Updated README/build notes
    404: ....0.exe) from the Sashimi SourceForge project file release page:
  20. TPP:5.2.0 Release Notes (15364 bytes)
    1: ...ne (TPP) software, release 5.2.0 is a '''major''' release of TPP that contains new features, improvements, ...
    6: ...elease notes are available at [[TPP:5.1.0_Release_Notes]]''
    66: ...file -- '''Please read the relevant Comet release notes, as some parameters have changed behavior'''
    330: ....0.exe) from the Sashimi SourceForge project file release page:
    344: ...heckout svn://svn.code.sf.net/p/sashimi/code/tags/release_5-2-0

Page text matches

  1. Main Page (6445 bytes)
    28: * '''The latest TPP version is ''7.0.0,'' released ''March 2024''.'''
    30: ** Release Notes: [[TPP:7.0.0_Release_Notes]]
  2. TPP:7.0.0 Release Notes (6764 bytes)
    1: = TPP 7.0.0 ARAFEL Release Notes =
  3. TPP:Installing on Mac OSX (12870 bytes)
    5: These notes were kindly prepared by Ulrich auf dem Keller of ...
    8: ...bes installation of the TPP, version v4.0 SQUALL (release candidate) rev.0, Build 200805281113 (linux) on M...
    232: create Makefile.config.incl for newer TPP releases!
    291: ('''You still have to do that for the TPP v4.0 (release candidate from svn!''')
  4. TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11579 bytes)
    11: This recipe describes installing TPP release 7.0.0.
    13: First some general notes
    55: Create a ~/svn directory and pull release 7.0.0 (or alternatively, you can pull the
    63: ...eckout http://svn.code.sf.net/p/sashimi/code/tags/release_7-0-0
    71: <pre>cd ~/svn/release_7-0-0
  5. Formats:mzXML (9722 bytes)
    15: ... converter !! SPC maintained? !! converter status/notes !! download
    19: ...oftware:ReAdW|ReAdW]] || yes, SPC || || official release: 4.3.0, August 2009; see [[Software:ReAdW|ReAdW]]...
    21: ...f|wolf]] || yes, SPC || no centroiding || offical release: 4.3.0, August 2009; see [[Software:massWolf|wolf...
    23: ...ftware:mzWiff|mzWiff]]|| yes, SPC || || official release: 4.3.0, August 2009: see [[Software:mzWiff|mzWiff...
    25: ...d directory || trapper || yes, SPC || || official release: 4.3.0, August 2009: see [[Software:trapper|trapp...
  6. Terry's compbio links (11123 bytes)
    87: '''Vim:''' [http://www.swaroopch.com/notes/Vim_en:Table_of_Contents A Byte of Vim], the text...
    88: [http://www.zinkwazi.com/unix/notes/vimtips.html Sweet little Vim recipes.]
    118: ...,325 entries for UniProt release 14.0. Swiss-Prot release 56.6 of 16-Dec-08 contains 20,333 human proteins.
    129: [[Building Peptide Atlas | Terry's notes on how to perform a Peptide Atlas build]]
    131: [[PeptideAtlas software | Additional notes on PeptideAtlas software]]
  7. TPP:4.1 Release Notes (1819 bytes)
    1: == TPP 4.1 Release Notes ==
  8. TPP:4.3.0 Release Notes (13496 bytes)
    1: Trans-Proteomic Pipeline (TPP) 4.3.0 release notes
    3: (Changes since the last official release, 4.2.1)
    6: ...e to the Trans-Proteomic Pipeline (TPP) software, release 4.3.0 (4.3 revision). The software is available ...
    47: * updated Windows build notes
    75: * Further notes available at the SPCtools wiki, http://tools.prot...
  9. TPP:4.4.0 Release Notes (31941 bytes)
    1: ...Proteomic Pipeline (TPP) "Vuvuzela" 4.4.0 release notes
    3: (Changes since the last official release, 4.3.1)
    5: ...e to the Trans-Proteomic Pipeline (TPP) software, release 4.4.0 (4.4 revision). The software is available ...
    12: ...sion of this tool has been included with this TPP release.
    159: tidy up notes to match current code
  10. TPP:4.4.1 Release Notes (2746 bytes)
    1: ...Proteomic Pipeline (TPP) "Vuvuzela" 4.4.1 Release Notes'''
    3: ...ne (TPP) software, release 4.4.1 is a maintenance release which addresses a number of issues that have been...
    5: ...elease notes are available at [[TPP:4.4.0_Release_Notes]]''
    32: ..._1.exe) from the Sashimi SourceForge project file release page:
    45: .../sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-4-1"
  11. TPP:4.5.0 Release Notes (8358 bytes)
    1: ...-Proteomic Pipeline (TPP) "Rapture" 4.5.0 Release Notes'''
    3: ...s if you have any questions or problems with this release please let us know on the [http://groups.google.c...
    5: ...elease notes are available at [[TPP:4.6.0_Release_Notes]]''<br>
    6: ...elease notes are available at [[TPP:4.4.1_Release_Notes]]''
    139: ..._0.exe) from the Sashimi SourceForge project file release page:
  12. TPP:4.5.1 Release Notes (4270 bytes)
    2: ...-Proteomic Pipeline (TPP) "Rapture" 4.5.1 Release Notes'''
    4: ...ne (TPP) software, release 4.5.1 is a maintenance release that addresses a number of issues found with 4.5....
    6: ...elease notes are available at [[TPP:4.5.0_Release_Notes]]''
    66: ..._1.exe) from the Sashimi SourceForge project file release page:
    79: .../sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-5-0"
  13. TPP Amazon Machine Images (12796 bytes)
    13: !style="background-color: #F0F0F0; padding: 4px"| Release
    16: !style="background-color: #F0F0F0; padding: 4px"| Notes
    135: ...t) and instance-store block store then choose the release you want to use and note the AMI-ID.
  14. ReleasePlanning (12743 bytes)
    1: This page is intended to assist in release planning by tracking new feature requests/bugs/im...
    3: == 5.0.0 Release ==
    80: ...EADME. Future READMEs should just be the release notes with the URLS to the wikis.
    137: ...ts, fixes, etc.. to be cherry picked for upcoming releases.
    212: ...upported engines, so it doesn't need to be in the release soon.)
  15. TPPDev:ReleaseChecklist (1043 bytes)
    9: == Pre-release Preparation ==
    11: * Copy current release's release notes wiki page on tools.proteomecenter.org and edit ap...
    15: * Create a new folder for the release in sourceforge
    17: * Create release candidates, upload to sourceforge, rinse, repeat
    19: == Release Time ==
  16. TPP:4.5.2 Release Notes (4692 bytes)
    1: ...-Proteomic Pipeline (TPP) "Rapture" 4.5.2 Release Notes'''
    3: ...ne (TPP) software, release 4.5.2 is a maintenance release that addresses a number of issues found with 4.5....
    5: ...elease notes are available at [[TPP:4.5.1_Release_Notes]]''
    6: ...elease notes are available at [[TPP:4.5.0_Release_Notes]]''
    38: ...ix is only needed until the developers of inspect release a new version that includes these changes.
  17. TPP:4.6.0 Release Notes (4524 bytes)
    1: ...s-Proteomic Pipeline (TPP) "Occupy" 4.6.0 Release Notes'''
    3: ...Pipeline (TPP) software, release 4.6.0 is a minor release of TPP that contains several new features. The s...
    5: ...elease notes are available at [[TPP:4.5.2_Release_Notes]]''
    36: * ''Updated X!Tandem to the latest release: CYCLONE (2011.12.01)''
    80: ..._0.exe) from the Sashimi SourceForge project file release page:
  18. TPP:4.6.1 Release Notes (3640 bytes)
    1: ...ne (TPP) software, release 4.6.1 is a maintenance release of TPP that contains several fixes to 4.6.0. The...
    3: ...elease notes are available at [[TPP:4.6.0_Release_Notes]]''
    46: ..._1.exe) from the Sashimi SourceForge project file release page:
    59: .../sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-6-1"
    63: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...
  19. TPP:4.6.2 Release Notes (2282 bytes)
    3: ...ne (TPP) software, release 4.6.2 is a maintenance release of TPP that contains several fixes to 4.6.1. The...
    5: ...elease notes are available at [[TPP:4.6.1_Release_Notes]]''
    29: ..._2.exe) from the Sashimi SourceForge project file release page:
    42: .../sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-6-2"
    46: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...
  20. TPP:4.6.3 Release Notes (4087 bytes)
    1: ...ne (TPP) software, release 4.6.3 is a maintenance release of TPP that contains changes to 4.6.2. The softw...
    3: ...elease notes are available at [[TPP:4.6.2_Release_Notes]]''
    70: ..._3.exe) from the Sashimi SourceForge project file release page:
    83: ...heckout svn://svn.code.sf.net/p/sashimi/code/tags/release_4-6-3
    86: ...plus all other developers who contributed to this release from the ISB. Thanks to developers and users fro...

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