Formats:pepXML
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| - | A format for storage, exchange, and processing of peptide sequences derrived from ms/ms scans. | + | '''pepXML''' Is a open data format developed at the SPC/Institute for Systems biology for the storage, exchange, and processing of peptide sequence assignments of MS/MS scans. pepXML is intended to provide a common data output format for many different MS/MS search engines and subsequent peptide-level analyses. Several search engines already have native support for outputting pepXML and converters are available to transform output files to pepXML. |
| ==Search-Engine to pepXML converters== | ==Search-Engine to pepXML converters== | ||
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| X!Tandem: [[Software:Tandem2XML|Tandem2XML]] | X!Tandem: [[Software:Tandem2XML|Tandem2XML]] | ||
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| + | ==PepXML Specification == | ||
| + | |||
| + | The latest version of the format is version 1.14. | ||
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| + | * [http://sashimi.svn.sourceforge.net/viewvc/sashimi/trunk/trans_proteomic_pipeline/schema/pepXML_v114.xsd pepXML 1.14 Schema] (xsd) | ||
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| + | == See Also == | ||
| + | [http://www.psidev.info/index.php?q=node/40 mzIdentML]: XML standard for MS, MS-MS, MSn or tag searches under development by the HUPO Proteomics Standards Initiative. | ||
Revision as of 21:04, 28 September 2009
pepXML Is a open data format developed at the SPC/Institute for Systems biology for the storage, exchange, and processing of peptide sequence assignments of MS/MS scans. pepXML is intended to provide a common data output format for many different MS/MS search engines and subsequent peptide-level analyses. Several search engines already have native support for outputting pepXML and converters are available to transform output files to pepXML.
Search-Engine to pepXML converters
Sequest: Out2XML
Mascot: Mascot2XML
X!Tandem: Tandem2XML
PepXML Specification
The latest version of the format is version 1.14.
- pepXML 1.14 Schema (xsd)
See Also
mzIdentML: XML standard for MS, MS-MS, MSn or tag searches under development by the HUPO Proteomics Standards Initiative.
