TPP:Related Tools
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| ==Introduction== | ==Introduction== | ||
| The TPP has many relationships with other software programs and projects. Some of these, like the TPP itself, are freely-available open-source projects, while others are commercial. Some of these tools provide compatiable data formats that can be used as input to the TPP, while others repackage or redistribute the TPP itself. | The TPP has many relationships with other software programs and projects. Some of these, like the TPP itself, are freely-available open-source projects, while others are commercial. Some of these tools provide compatiable data formats that can be used as input to the TPP, while others repackage or redistribute the TPP itself. | ||
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| + | ==Compatible Sequence Search Engines== | ||
| + | All of the programs attempt to assign an amino acid peptide identification to a MS2 spectra. The TPP includes tools to convert the proprietary search engine output file into the TPP's native, open format called [[Formats:pepXML|pepXML]]. We always welcome opportunities to add support for additional search engines. For information about working with these search engines please see [[TPP:Supported Search Engines]] | ||
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| + | Compatible search engines, added in order of support: | ||
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| + | *Sequest | ||
| + | *Comet | ||
| + | *ProbID | ||
| + | *Mascot | ||
| + | *X!Tandem | ||
| + | *Phenyx | ||
Revision as of 23:41, 11 September 2007
Introduction
The TPP has many relationships with other software programs and projects. Some of these, like the TPP itself, are freely-available open-source projects, while others are commercial. Some of these tools provide compatiable data formats that can be used as input to the TPP, while others repackage or redistribute the TPP itself.
Compatible Sequence Search Engines
All of the programs attempt to assign an amino acid peptide identification to a MS2 spectra. The TPP includes tools to convert the proprietary search engine output file into the TPP's native, open format called pepXML. We always welcome opportunities to add support for additional search engines. For information about working with these search engines please see TPP:Supported Search Engines
Compatible search engines, added in order of support:
- Sequest
- Comet
- ProbID
- Mascot
- X!Tandem
- Phenyx
