Software:TPP
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| Software contained in the TPP: | Software contained in the TPP: | ||
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| + | ==Probability Assignment and Validation== | ||
| [[Software:PeptideProphet|PeptideProphet]]: Statistical validation of spectra-to-peptide sequence, using search engine results. | [[Software:PeptideProphet|PeptideProphet]]: Statistical validation of spectra-to-peptide sequence, using search engine results. | ||
| [[Software:ProteinProphet|ProteinProphet]]: Protein identification and validation, using [[Software:PeptideProphet|PeptideProphet]] results. | [[Software:ProteinProphet|ProteinProphet]]: Protein identification and validation, using [[Software:PeptideProphet|PeptideProphet]] results. | ||
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| + | ==Protein Quantification== | ||
| [[Software:XPRESS|XPRESS]]: Calculation of relative abundance of proteins from MS/MS data. | [[Software:XPRESS|XPRESS]]: Calculation of relative abundance of proteins from MS/MS data. | ||
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| [[Software:Libra|Libra]]: Four channel quantification software. | [[Software:Libra|Libra]]: Four channel quantification software. | ||
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| + | ==Protein ID Curation== | ||
| [[Software:Pep3D|Pep3D]]: Viewer for LC-MS and LC-MS/MS results. | [[Software:Pep3D|Pep3D]]: Viewer for LC-MS and LC-MS/MS results. | ||
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| + | ==Graphical User Interface (GUI)== | ||
| + | [[Software:Petunia|Petunia]]: Petunia is the name of the TPP's GUI, presented as a web application. | ||
Revision as of 21:38, 9 April 2007
The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics, developed at the SPC.
Software contained in the TPP:
Contents |
Probability Assignment and Validation
PeptideProphet: Statistical validation of spectra-to-peptide sequence, using search engine results.
ProteinProphet: Protein identification and validation, using PeptideProphet results.
Protein Quantification
XPRESS: Calculation of relative abundance of proteins from MS/MS data.
ASAPRatio: Automated Statistical Analysis on Protein Ratio.
Libra: Four channel quantification software.
Protein ID Curation
Pep3D: Viewer for LC-MS and LC-MS/MS results.
Graphical User Interface (GUI)
Petunia: Petunia is the name of the TPP's GUI, presented as a web application.
