Formats:mzXML
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| Several versions of this format exist. Currently these are 1.0 (also called "msXML"), 2.0, 2.1 and 3.0. 2.1 is the version most commonly in use. | Several versions of this format exist. Currently these are 1.0 (also called "msXML"), 2.0, 2.1 and 3.0. 2.1 is the version most commonly in use. | ||
| + | |||
| + | ==raw data to mzXML converters== | ||
| + | Converters exist for several instrument/software vendors: | ||
| + | |||
| + | *[[Software:ReAdW|ReAdW]]: Thermo/XCalibur raw data (.RAW files) to mzXML converter | ||
| + | *[[Software:mzStar|mzStar]]: Analyst (ABI/MDS Sciex) software (.wiff files) to mzXML converter | ||
| + | *[[Software:massWolf|massWolf]]: MassLynx (Waters) to mzXML converter | ||
| ==Reference== | ==Reference== | ||
| *Pedrioli PGA, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti R, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK Jr, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. (2004) "A Common Open Representation of Mass Spectrometry Data and its Application in a Proteomics Research Environment." Nature Biotechnology 22(11):1459-1466. [http://www.proteomecenter.org/PDFs/Desiere.GenomeBiology.04.pdf Download PDF] | *Pedrioli PGA, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti R, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK Jr, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. (2004) "A Common Open Representation of Mass Spectrometry Data and its Application in a Proteomics Research Environment." Nature Biotechnology 22(11):1459-1466. [http://www.proteomecenter.org/PDFs/Desiere.GenomeBiology.04.pdf Download PDF] | ||
| *Learn more at the [http://sashimi.sourceforge.net/ Sashimi project website]. | *Learn more at the [http://sashimi.sourceforge.net/ Sashimi project website]. | ||
Revision as of 19:17, 9 May 2007
A data format for storage and exchange of mass spectroscopy data, developed at the ISB originally by Patrick Pedrioli.
Several versions of this format exist. Currently these are 1.0 (also called "msXML"), 2.0, 2.1 and 3.0. 2.1 is the version most commonly in use.
raw data to mzXML converters
Converters exist for several instrument/software vendors:
- ReAdW: Thermo/XCalibur raw data (.RAW files) to mzXML converter
- mzStar: Analyst (ABI/MDS Sciex) software (.wiff files) to mzXML converter
- massWolf: MassLynx (Waters) to mzXML converter
Reference
- Pedrioli PGA, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti R, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK Jr, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. (2004) "A Common Open Representation of Mass Spectrometry Data and its Application in a Proteomics Research Environment." Nature Biotechnology 22(11):1459-1466. Download PDF
- Learn more at the Sashimi project website.
