Software:TPP

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-	Trans-Proteomic Pipeline	+	The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics, developed at the SPC.
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		+	Software contained in the TPP:
		+
		+	[[Software:PeptideProphet|PeptideProphet]]: Statistical validation of spectra-to-peptide sequence, using search engine results.
		+
		+	[[Software:ProteinProphet|ProteinProphet]]: Protein identification and validation, using [[Software:PeptideProphet|PeptideProphet]] results.
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		+	[[Software:XPRESS|XPRESS]]: Calculation of relative abundance of proteins from MS/MS data.
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		+	[[Software:ASAPRatio|ASAPRatio]]: Automated Statistical Analysis on Protein Ratio.
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		+	[[Software:Libra|Libra]]: Four channel quantification software.
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		+	[[Software:Pep3D|Pep3D]]: Viewer for LC-MS and LC-MS/MS results.

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Revision as of 18:53, 9 April 2007

The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics, developed at the SPC.

Software contained in the TPP:

PeptideProphet: Statistical validation of spectra-to-peptide sequence, using search engine results.

ProteinProphet: Protein identification and validation, using PeptideProphet results.

XPRESS: Calculation of relative abundance of proteins from MS/MS data.

ASAPRatio: Automated Statistical Analysis on Protein Ratio.

Libra: Four channel quantification software.

Pep3D: Viewer for LC-MS and LC-MS/MS results.