TPP:Windows Cygwin Installation
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| Revision as of 22:39, 2 November 2006 Dshteynb (Talk | contribs) (→Accessing Petunia (Windows / Cygwin)) ← Previous diff |
Revision as of 22:49, 2 November 2006 Dshteynb (Talk | contribs) (→Setup.exe Installation Gallery) Next diff → |
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| ==== Setup.exe Installation Gallery ==== | ==== Setup.exe Installation Gallery ==== | ||
| <gallery caption="Setup.exe Installation Wizard"> | <gallery caption="Setup.exe Installation Wizard"> | ||
| - | Image:cygsetup1.png|1. Select to<br/>"Install from the Internet" | + | Image:Cygsetup1.jpg|1. Select to<br/>"Install from the Internet" |
| - | Image:cygsetup2.png|2. The default installation will install cygwin to c:\cygwin.<br/>Keep the other options set to default "RECOMMENDED" settings. | + | Image:Cygsetup2.jpg|2. The default installation will install cygwin to c:\cygwin.<br/>Keep the other options set to default "RECOMMENDED" settings. |
| - | Image:cygsetup3.png|3. Select a directory where you want to download the temporary<br/>installation files. If unsure the "Desktop" is a good default. | + | Image:Cygsetup3.jpg|3. Select a directory where you want to download the temporary<br/>installation files. If unsure the "Desktop" is a good default. |
| - | Image:cygsetup4.png|4. Choose "Direct Connection" to the Internet. | + | Image:Cygsetup4.jpg|4. Choose "Direct Connection" to the Internet. |
| - | Image:cygsetup5.png|5. Select <nowiki>"http://tools.proteomecenter.org"</nowiki> as the Download Site. | + | Image:Cygsetup5.jpg|5. Select <nowiki>"http://tools.proteomecenter.org"</nowiki> as the Download Site. |
| - | Image:cygsetup6.png|6. All default installation packages should be installed<br/>along with any automatically selected dependencies. | + | Image:Cygsetup6.jpg|6. All default installation packages should be installed<br/>along with any automatically selected dependencies. |
| </gallery> | </gallery> | ||
Revision as of 22:49, 2 November 2006
Contents |
Installation
Windows / Cygwin Installation
Setup.exe Installation Program
- You must be logged on as an Administrator to install these tools.
- Download the setup.exe installation program from this link http://tools.proteomecenter.org/software/cygwin/setup.exe
- Follow default installation by clicking "Next" at each installation step, until the installation is completed
- Reboot the computer
- If everything worked correctly you should be able to now access the TPP Web Interface
Setup.exe Installation Gallery
 1. Select to |
 2. The default installation will install cygwin to c:\cygwin. |
 3. Select a directory where you want to download the temporary |
 4. Choose "Direct Connection" to the Internet. |
 5. Select "http://tools.proteomecenter.org" as the Download Site. |
 6. All default installation packages should be installed |
Starting/Stopping Apache
- Open Control Panel → Administrative Tools → Services
- Start the service cygapache2_stop to STOP Apache2 for cygwin
- Start the service cygapache2_start to START Apache2 for cygwin
- Please allow up to a minute for each service to do its job, these services will finish automatically
Installation Troubleshooting
- Open Control Panel → System → Advanced → Environment Variables and verify that the following System variables are set:
- WEBSERVER_ROOT
- Set to "C:\Inetpub\wwwroot\"
- WEBSERVER_URL
- Set to "http://localhost:1441/"
- COMETLINKSFILE
- Set to "C:\Inetpub\tpp-bin\cometlinks.def"
- PATH
- Begins with "C:\cygwin\usr\X11R6\bin;C:\cygwin\bin;"
- Open Control Panel → Administrative Tools → Services and verify that the following Services are present:
- cygserver
- Startup Type set to Automatic
- cygapache2_start
- Startup Type set to Automatic
- cygapache2_stop
- Startup Type set to Manual
Using Petunia
Petunia is the name for the Web Interface for interacting with the TPP tools.
Accessing Petunia (Windows / Cygwin)
- To access Petunia open a Web Browser and refer it http://localhost:1441/tpp-bin/tpp_gui.pl
- If you have a Petunia icon entitled TPP Web Tools on the Desktop you can access the interface by clicking on the icon.
- You may also find Petunia in Start → Program Files → TPP → TPP Web Tools.
You should be presented with a login page asking for a user name and password.
The default login authentication: Username: guest, Password: guest
- If you have any problems at this point, you may want to consult the Troubleshooting Guide.
If login was successful the next page will be a Welcome page.
Example Data Analysis
Windows / Cygwin Example
Sequest Searched Data Example
Downloading Example Data
- Make sure you have atleast 1 Gig of space on your harddrive before you start!
- Download the file from the following link: http://tools.proteomecenter.org/sample_data/raftapr_searched.tgz
- Save the file in the c:\Inetpub\wwwroot\ISB\data directory on your computer
- Using WinZip or a similar application extract all of the files in the compressed archive file to the current directory.
- After extraction you should have a directory c:\Inetpub\wwwroot\ISB\data\raft that contains many files.
- Open the TPP Web Interface.
Additional Sample Data Sources
- Example data is available from many locations including:
