TPP:Authors and Contributors

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	Alphabetical by last name (current affiliation, if known): major work		Alphabetical by last name (current affiliation, if known): major work
-	* James Eddes: MS spectra curation and quality assesment	+	* James Eddes: MS spectra curation and quality assesment (QualScore)
-	* Jimmy Eng (University of Washington, ISB): MS/MS spectra-to-peptide identification	+	* Jimmy Eng (University of Washington, ISB): MS/MS spectra-to-peptide identification (SEQUEST)
	* Robert Hubley: original creator of cygwin-based Windows TPP distribution		* Robert Hubley: original creator of cygwin-based Windows TPP distribution
	* Andrew Keller: statistical tools		* Andrew Keller: statistical tools
-	* Nichole King: Quantification (Libra)	+	* Nichole King: iTRAQ-labeled quantification (Libra)
-	* Henry Lam (Hong Kong University of Science and Technology): spectral library search	+	* Henry Lam (Hong Kong University of Science and Technology): spectral library search (SpectraST)
-	* Luis Mendoza (ISB): graphic interface	+	* Xiao-jun Li: quantification (ASAPRatio)
		+	* Luis Mendoza (ISB): graphic interface (Petunia)
	* Alexey Nesvizhskii (University of Michigan): statistical tools		* Alexey Nesvizhskii (University of Michigan): statistical tools
	* Patrick Pedrioli: mzXML open format creator, original work on file conversion		* Patrick Pedrioli: mzXML open format creator, original work on file conversion
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	* Joe Slagel: cloud-based (AWS) workflow management		* Joe Slagel: cloud-based (AWS) workflow management
	* Natalie Tasman (Insilicos): cross-platform build and release, data visualization, raw format conversion		* Natalie Tasman (Insilicos): cross-platform build and release, data visualization, raw format conversion
-	* Ning Zhang: ProbID search engine	+	* Ning Zhang: ProbID search engine (ProbID)
	== significant contributors and collaborators ==		== significant contributors and collaborators ==

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Revision as of 20:24, 28 June 2010

The Trans-Proteomic Pipeline (TPP) is a collaborative open-source project. It was originally started at the Institute for Systems Biology (ISB) in the Aebersold Lab. The project has since grown, with active contributors from institutions all over the world. The ISB continues to provide primary support for the project, with other primary collaborators and contributors at Insilicos LLC, the University of Washington, Fred Hutch Cancer Research Center, and the University of Hong Kong.

(TODO: add note about many people contributing from newsgroup)

primary authors

Alphabetical by last name (current affiliation, if known): major work

• James Eddes: MS spectra curation and quality assesment (QualScore)
• Jimmy Eng (University of Washington, ISB): MS/MS spectra-to-peptide identification (SEQUEST)
• Robert Hubley: original creator of cygwin-based Windows TPP distribution
• Andrew Keller: statistical tools
• Nichole King: iTRAQ-labeled quantification (Libra)
• Henry Lam (Hong Kong University of Science and Technology): spectral library search (SpectraST)
• Xiao-jun Li: quantification (ASAPRatio)
• Luis Mendoza (ISB): graphic interface (Petunia)
• Alexey Nesvizhskii (University of Michigan): statistical tools
• Patrick Pedrioli: mzXML open format creator, original work on file conversion
• Brian Pratt (Insilicos): optimization, data formats
• David Shteynberg (ISB): statistical tools within the TPP
• Joe Slagel: cloud-based (AWS) workflow management
• Natalie Tasman (Insilicos): cross-platform build and release, data visualization, raw format conversion
• Ning Zhang: ProbID search engine (ProbID)

significant contributors and collaborators

• Chee-Hong

• ProteoWizard project (describe project relationship)

• Labkey (formerly CPAS)

• X!Tandem

other contributors

• Rune (masswolf)

• TODO: people from the newsgroup