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- Running the TPP docker image (8867 bytes)
36: === Running a specific TPP program from the docker image ===
54: === Running the TPP GUI via Docker ===
59: This will start a container running a web server from the spctools/tpp image, map por...
61: === Checking to make sure the Docker image is running ===
66: ...ou should see at least one spctools/tpp container running. To use the GUI, direct your browser to the URL h... - Running the TPP Singularity image (3969 bytes)
8: ... to install Singularity your computer. If you are running Fedora or Enterprise Linux, installation should b...
13: If you are running Ubuntu or another distribution of Linux, installa...
61: === Running a specific TPP program via the Singularity image ...
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- TPP:V5Feedback (11460 bytes)
19: * <s>Uninstall reports error when tpptray is running and in system tray. Should shut down executable ...
44: ** pvalue link to interact-pval.png is broken. (look in PValueModel.cxx)
94: ...ctrast/OR20080317_S_SILAC-LH_1-1_01.00417.00417.2.png) Seen when clicking on a spectrum in the pepxmlv... - TPP:Developer Documentation (23931 bytes)
69: *libpng www.libpng.org
193: ==Running the TPP== - TPP:Windows Cygwin Installation (7499 bytes)
11: === Downloading and Running the Setup.exe Installation Program ===
56: ...sages, should be none unless cygserver is already running, which is ok.
66: ... have to re-download the cygwin setup program; re-running will find the latest version via the internet. J...
84: === (OPTIONAL!) Running with the IIS webserver instead of Apache=== - TPP:Frequently Asked Questions (5647 bytes)
30: ...pache installation conflict with other webservers running on my Windows system?===
47: |[[Image:interact-1to5xcorrPPM.pep_FVAL_2.png|thumb|CLEVEL=0]]
48: |[[Image:interact-1to5xcorrPPMc05.pep_FVAL_2.png|thumb|CLEVEL=0.5]]
49: |[[Image:interact-1to5xcorrPPMc1.pep_FVAL_2.png|thumb|CLEVEL=1]]
51: |[[Image:interact-1to5xcorrPPM.pep_FDR_10pc.png|thumb|CLEVEL=0]] - TPP:7.0.0 Release Notes (6884 bytes)
53: ...X * parsing protein descriptions from fasta files running on CentOS (reported by Jimmy) - TPP:Installing on Mac OSX (12870 bytes)
13: This tutorial is intended for someone comfortable running unix shell commands and installing and configurin...
16: Intel-based Mac running OSX 10.5.2. At this time, certain parts of the c...
64: =====running on a different port (1441 is the standard port fo...
325: (to get right path for png images with WEBSERVER_ROOT stripped off)
328: //printf("<img src=\"%s\"/>\n", pngFile); - TPP 7.0.0: Installing on Ubuntu 22.04 LTS (11616 bytes)
15: ...n a fresh Azure cloud computing platform instance running Ubuntu 22.04 LTS in April 2024
113: ...ipts in $TPP/bin and $TPP/cgibin to ensure you're running the correct version of Perl.
157: ...e server is running as the user www-data. If it's running as a different user, then substitute that. - Software:ReAdW (1604 bytes)
2: [[image:ReAdW.png|thumb|right]]
31: Try running ReAdW again. - TPP:Example data analysis (2562 bytes)
33: ## Wait for the conversions to finish running. - Software:PeptideSieve (6357 bytes)
26: ===Running the software===
29: PeptideSieve is a commandline utility. Running it sans arguments gives the usage instructions: - Software:Out2XML (2805 bytes)
7: ==Running Out2XML==
35: ...ld be /link/to/folder/containing/db/mydb.fasta if running TPP on Linux. Thus, viewing of protein sequences ... - TPP:Installing on Ubuntu 7.04 (9446 bytes)
35: | libpng
36: | www.libpng.org
37: | libpng12-dev
129: ...ans anyone can dump data in to this directory for running/viewing proteomics data through the pipeline. I'v... - TPP:X!Tandem and the TPP (5454 bytes)
28: ==Running X!Tandem== - Software:Tandem2XML (1413 bytes)
9: ==Running Tandem2XML== - Software:SpectraST (70083 bytes)
91: === Running SpectraST ===
95: The simplest way of running SpectraST is from the command line of your UNIX/L...
368: Then running the command:
372: is equivalent to running
711: ...lone plotspectrast application produces a static .png image in the same directory as the query spectrum... - TPP Tutorial v1 (43187 bytes)
15: ...l was designed for the scientist who is currently running SEQUEST searches on their tandem mass spectrometr...
22: ...ch engine. Searched data is provided. A computer running Windows, XP or 2000 is required. Currently build...
41: ...he dark days of DOS you will not have any problem running TPP from DOS. If not, we have included a few rem...
155: ...wing data on the computer where the TPP tools are running.
158: [[Image:login.png]] - Software:ProbID (2453 bytes)
24: ==Running ProbID== - TPP:ProbID and the TPP (578 bytes)
10: ==Running ProbID== - Software:JRAP (838 bytes)
9: the archive by running "jar xf jrap.jar" to take a look at the source co... - Software:TIQAM (7374 bytes)
45: ...community edition 5.0 database installed prior to running TIQAM software. TIQAM software can be downloaded ...
53: #Start MySQL prior to running any of TIQAM software. The automatic start-up of ...
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