Software:RemoteConvert

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(Instructions on install user defined service:)
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(Requirements)
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-'''RemoteConvert: TConvert the raw file remotely.'''+'''RemoteConvert'''
==Description== ==Description==
Line 6: Line 6:
==Requirements== ==Requirements==
-The following is a list of software need to be installed in window machine before you can convert each type of the raw file.+The following is a list of software need to be installed on window machine before you can convert each type of the raw file.
 + 
 +{| class="wikitable" style="text-align:center;" border="2" cellpadding="2"
 +|-
 +! Raw file type !! Raw-to-mzXML/mzML converter !! Required Software
 +|-
 +| .RAW file || [http://tools.proteomecenter.org/wiki/index.php?title=Software:ReAdW ReAdw] || Thermo's XCalibur software
 +|-
 +| raw dir || [http://tools.proteomecenter.org/wiki/index.php?title=Software:massWolf massWolf] || Waters' MassLynx software
 +|-
 +| .wiff || [http://tools.proteomecenter.org/wiki/index.php?title=Software:mzWiff mzWiff] || Analyst software
 +|-
 +|-
 +| .wiff || mzML_Exporter || /
 +|-
 +|-
 +| .baf .yep || [http://tools.proteomecenter.org/wiki/index.php?title=Software:CompassXport CompassXport] || CompassXport, produced by Bruker
 +|-
 +|}
==How to use it== ==How to use it==
-Suppose the remote window machine is named[[ R machine]]. The local linux machine is named [[L machine]].+Suppose the remote window machine is named R machine. The local linux machine is named L machine.
-[[On R machine:]]+'''On R machine:'''
mkdir C:\convert mkdir C:\convert
Line 24: Line 42:
perl RemoteConvertServer.pl perl RemoteConvertServer.pl
-[[On L machine:]]+'''On L machine:'''
Download remoteconvert.pl and save into some dir. Download remoteconvert.pl and save into some dir.
Line 32: Line 50:
./ remoteconvert.pl –showoptions: show all options available for each converter ./ remoteconvert.pl –showoptions: show all options available for each converter
-==Install RemoteConvert as service==+==Install RemoteConvert as a service==
-The service will stop if the user session is time out or the window machine is restarted. I complied the perl code into a executable using triall version of perl2exe, and installed it as service on a window 2000 and a window server 2003 sucessfully, thus the service will keep running without user log in and restart by itself after the computer restarts. +The service will stop if the user session is time out or the window machine is restarted. I complied the perl code into a executable using triall version of perl2exe, and installed it as service on a window 2000 and a window server 2003 sucessfully, thus the service will keep running without user log in and restart by itself after the computer restarts.
 +== Instructions on installing user defined service: ==
-== Instructions on install user defined service: ==+ 1.Use perl2exe or other software to convert the perl program
- + (server side) to executable. Save your perl executable into
-Use perl2exe or other software to convert the perl program (server side) to exectuable. + C:\convert
- Suppose your perl executable is located in C:\convert+ 2.Download and install resource kit tool from Microsoft
- 1.Download and install resource kit tool from Microsoft website according to which version of window machine you have.+ website.
- Window server 2003:+ Window server 2003:[http://www.microsoft.com/downloads/details.aspx?FamilyID=9D467A69-57FF-4AE7-96EE-B18C4790CFFD&displaylang=en]
- + Window 2000:[http://www.microsoft.com/downloads/details.aspx?displaylang=en&FamilyID=3e89879d-6c0b-4f92-96c4-1016c187d429]
-http://www.microsoft.com/downloads/details.aspx?FamilyID=9D467A69-57FF-4AE7-96EE-B18C4790CFFD&displaylang=en+ Alternatively if you can get INSTSRV.EXE and SRVANY.EXE
- Window 2000: + somewhere, you don’t need to install the whole resource kit.
- + Suppose these two executable are located in “C:\reskit”
-http://www.microsoft.com/downloads/details.aspx?displaylang=en&FamilyID=3e89879d-6c0b-4f92-96c4-1016c187d429+ 3.At a MS-DOS command prompt(running CMD.EXE), type the
- Alternatively if you can get INSTSRV.EXE and SRVANY.EXE somewhere, you don’t need to install the whole resource kit.+ following command:
-Suppose these two executable is located in “C:\reskit”+ C:\reskit\INSTSRV.EXE RemoteConvert C:\reskit\SRVANY.EXE
- 2.At a MS-DOS command prompt(running CMD.EXE), type the following command:+ 4.Run Registry Editor (start|run|regedit) and locate the
- C:\reskit\INSTSRV.EXE RemoteConvert C:\reskit\SRVANY.EXE+ following subkey:
- 3.Run Registry Editor (start|run|regedit) and locate the following subkey: HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\RemoteConvert + HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\RemoteConvert
- a. From the Edit menu, click New Key. Type the following and click OK:+ a. From the Edit menu, click New Key. Type the following
 + and click OK:
Key Name: Parameters Key Name: Parameters
Class : <leave blank> Class : <leave blank>
b. Select the Parameters key. b. Select the Parameters key.
- From the Edit menu, click New Value. Type the following and click OK:+ From the Edit menu, click New Value. Type the following
 + and click OK:
Value Name: Application Value Name: Application
Data Type: REG_SZ Data Type: REG_SZ
String: C:\convert\RemoteConvertServer.exe String: C:\convert\RemoteConvertServer.exe
c. Select the Parameters key c. Select the Parameters key
- From the Edit menu, click New Value. Type the following and click OK:+ From the Edit menu, click New Value. Type the following
 + and click OK:
Value Name: AppDirectory Value Name: AppDirectory
Data Type: REG_SZ Data Type: REG_SZ
String: C:\convert String: C:\convert
d. Close Registry Editor. d. Close Registry Editor.
- 4: start the service+ 5: start the service
control panel -> administrative tool -> component service control panel -> administrative tool -> component service
Find the "RemoteConvert" Find the "RemoteConvert"
Click it Click it
on popup window, click start on popup window, click start
 +
 +
'''This software is included in the current [[Software:TPP|TPP]] distribution.''' '''This software is included in the current [[Software:TPP|TPP]] distribution.'''
 +
Additional methods for obtaining the software are: Additional methods for obtaining the software are:
*Download from SourceForge Sashimi project file release: [] *Download from SourceForge Sashimi project file release: []
*Browse sourcecode from on Sashimi project SVN[]. *Browse sourcecode from on Sashimi project SVN[].

Current revision

RemoteConvert

Contents

Description

Because several conversion programs depend on Windows-only vendor libraries from different manufacture, this software will enable you converting your raw files in you local machine without logging in to remote window machine.

Requirements

The following is a list of software need to be installed on window machine before you can convert each type of the raw file.

Raw file type Raw-to-mzXML/mzML converter Required Software
.RAW file ReAdw Thermo's XCalibur software
raw dir massWolf Waters' MassLynx software
.wiff mzWiff Analyst software
.wiff mzML_Exporter /
.baf .yep CompassXport CompassXport, produced by Bruker

How to use it

Suppose the remote window machine is named R machine. The local linux machine is named L machine.

On R machine:

mkdir C:\convert Download converter executable and save into C:\convert

Download RemoteConvertServer.pl and lib dir, and save into C:\convert

Download 7-zip, unzip and save it into C:\convert\7-zip

cd C:\convert

perl RemoteConvertServer.pl

On L machine:

Download remoteconvert.pl and save into some dir.

./ remoteconvert.pl : show some examples command to run the software.

./ remoteconvert.pl –showoptions: show all options available for each converter

Install RemoteConvert as a service

The service will stop if the user session is time out or the window machine is restarted. I complied the perl code into a executable using triall version of perl2exe, and installed it as service on a window 2000 and a window server 2003 sucessfully, thus the service will keep running without user log in and restart by itself after the computer restarts.

Instructions on installing user defined service:

  1.Use perl2exe or other software to convert the perl program
    (server side) to executable. Save your perl executable into
    C:\convert
  2.Download and install resource kit tool from Microsoft 
    website.
    Window server 2003:[1]   
    Window 2000:[2]
    Alternatively if you can get INSTSRV.EXE and SRVANY.EXE 
    somewhere, you don’t need to install the whole resource kit.
    Suppose these two executable are located in “C:\reskit”
  3.At a MS-DOS command prompt(running CMD.EXE), type the 
    following  command:
    C:\reskit\INSTSRV.EXE RemoteConvert C:\reskit\SRVANY.EXE
  4.Run Registry Editor (start|run|regedit) and locate the
    following subkey:
 HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\RemoteConvert 
    a. From the Edit menu, click New Key. Type the following
       and click OK:
       Key Name: Parameters
       Class : <leave blank> 
    b. Select the Parameters key. 
       From the Edit menu, click New Value. Type the following
       and click OK:
       Value Name: Application
       Data Type: REG_SZ
       String: C:\convert\RemoteConvertServer.exe
    c. Select the Parameters key
       From the Edit menu, click New Value. Type the following
       and click OK:
       Value Name: AppDirectory
       Data Type: REG_SZ
       String: C:\convert
    d. Close Registry Editor.
  5: start the service
    control panel -> administrative tool -> component service
    Find the "RemoteConvert" 
    Click it
    on popup window, click start


This software is included in the current TPP distribution.


Additional methods for obtaining the software are:

  • Download from SourceForge Sashimi project file release: []
  • Browse sourcecode from on Sashimi project SVN[].
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