Running the TPP docker image
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| === Overview === | === Overview === | ||
| - | The docker system allows the distribution of pre-built computational units called images, which can be run on any system with the docker software installed. The scptools/tpp image is built | + | The docker system allows the distribution of pre-built computational units called images, which can be run on any system with the docker software installed. The scptools/tpp image is built on the biocontainer ubuntu image, and uses many of the bioC conventions. On some systems you may have to run these commands using sudo, a mechanism for elevating user privileges for specific tasks. The initial download described below will be relatively slow the first time it is run, since most if not all the 'layers' will have to be downloaded. Subsequent invocations will generally be much faster. |
| - | on the biocontainer ubuntu image, and uses many of the bioC conventions. On some systems you may have to run these commands using sudo, a mechanism for elevating user privileges for specific tasks. The initial download described below will be relatively slow the first time it is run, since most if not all the 'layers' will have to be downloaded. Subsequent invocations will generally be much faster. | + | |
| === Downloading spctools/tpp docker image === | === Downloading spctools/tpp docker image === | ||
Revision as of 00:34, 14 November 2018
Overview
The docker system allows the distribution of pre-built computational units called images, which can be run on any system with the docker software installed. The scptools/tpp image is built on the biocontainer ubuntu image, and uses many of the bioC conventions. On some systems you may have to run these commands using sudo, a mechanism for elevating user privileges for specific tasks. The initial download described below will be relatively slow the first time it is run, since most if not all the 'layers' will have to be downloaded. Subsequent invocations will generally be much faster.
Downloading spctools/tpp docker image
As mentioned above, this may be slow the first time it is run. Subsequent runs should be considerably faster. The example below shows a pull of the latest (default) version, you can also specify a specific version if desired.
[sudo] docker pull spctools/tpp Using default tag: latest Trying to pull repository docker.io/spctools/tpp ... latest: Pulling from docker.io/spctools/tpp Digest: sha256:686e9cc696fcbfd118a1ded28ae2d31218cbddd0daed68ac811400cc8833fa95 Status: Image is up to date for spctools/tpp:latest
