Msconvert Wine

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(Instructions for Ubuntu)
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: ./configure --enable-win64 CC=/usr/bin/gcc44 : ./configure --enable-win64 CC=/usr/bin/gcc44
log out log back in log out log back in
 +
 +
 +yum install freetype.i386
== References == == References ==

Revision as of 01:21, 16 January 2011

Proteowizard's msconvert utility is a must have tool for converting MS/MS data in almost any proprietary MS/MS data run into almost any of the commonly used open formats. While this tool is available on both Windows and Linux, the ability to convert many common formats under Linux is unavailable due to the need to have vendor specific libraries (dlls). Fortunately it *is* possible to run the Windows version of msconvert under Linux using Wine, a open source compatibility layer.


Instructions for Ubuntu

http://uec-images.ubuntu.com/releases/10.10/release/

Tested with 64 bit image ssh -X

sudo apt-get update
sudo apt-get install wine
sudo apt-get install cabextract
wget http://www.kegel.com/wine/winetricks
chmod 755 winetricks
./winetricks winxp
./winetricks vcrun2008
./winetricks dotnet20

Download and install Proteowizard

Go to http://proteowizard.sourceforge.net/download.html using a web browser. Click on the artifacts link for the Windows x86 (or x86_64) build. When the TeamCity login page is displayed log in as guest using the link provided. Download the file with the tar.bz2 extension. Extract the package and move it to wherever you want to install it:

mkdir pwiz # cause pwiz is rude and pollutes cd pwiz tar xvf ../pwiz*.tar.bz2


http://teamcity.labkey.org:8080/repository/download/bt83/24694:id/pwiz-bin-windows-x86-vc90-release-2_1_2464.tar.bz2

Instructions for CentOS

AMI: ami-01996f68

rpm -Uvh http://download.fedora.redhat.com/pub/epel/5/x86_64/epel-release-5-4.noarch.rpm
yum update
yum install xauth
yum install cabextract
yum install fontconfig
yum install -y gcc44
rpm -Uvh http://rpm.pbone.net/index.php3/stat/4/idpl/14565045/dir/centos_other/com/flex-2.5.35-7.x86_64.rpm.html
wget ftp://ftp.pbone.net/mirror/ftp.sourceforge.net/pub/sourceforge/h/project/hp/hphp/CentOS%205%2064bit/RPM/flex-2.5.35-7.x86_64.rpm
rpm -Uvh flex*
wget http://downloads.sourceforge.net/project/wine/Source/wine-1.2.1.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fwine%2F&ts=1295048793use_mirror=cdnetworks-us-1
./configure --enable-win64 CC=/usr/bin/gcc44

log out log back in


yum install freetype.i386

References

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