TPP:4.6.3 Release Notes

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Trans-Proteomic Pipeline (TPP) "Occupy" 4.6.3 Release Notes

** DRAFT DRAFT DRAFT DRAFT DRAFT **

Contents

New Features

  • Inclusion of the Comet search engine in the TPP distribution
  • Support for importing data in the PSI mzIdentML format
  • Ability to sync data to/from Amazon S3 via Petunia, which now also supports basic (browser) user authentication
  • Addition of FPKM models in iProphet and ProteinProphet
  • New tool for generating randomized decoy databases

Improvements/Changes

  • Support for Comet, MSGF+, and high-resolution X!Tandem k-score search results
  • Performance enhancements to PTMProphet and iProphet
  • Improved support for OMSSA, Myrimatch, and InsPecT search results, including a utility that fixes pepXML files
  • Support for unidentified spectra in spectrum viewer, updated to latest Lorikeet, and retired old Pep3D spectrum viewer
  • X!Tandem now issues a warning if invalid amino acids characters are spotted in in the fasta formatted database
  • [SpectraST] Different m/z tolerance for alignment and annotation; By default don't print top hits with zero f-value.

Bug fixes

  • Bug fixes and improvements to the user interfaces

Miscellaneous

Known Issues

Getting the TPP Software

TBD

SVN Log

The SVN log of all changes since the previous release are available at TPP:4.6.3_SVN_Log.

Retrieved from "http://tools.proteomecenter.org/wiki/index.php?title=TPP:4.6.3_Release_Notes"
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