GetTransitionsAPI
From SPCTools
[dcampbel@digdug virus_peptide_order]$ hgrep GetTransitions | grep tsv
886 wget 'https://db.systemsbiology.net/devDC/sbeams/cgi/PeptideAtlas/GetTransitions?pabst_build_id=13&protein_name_constraint=ENSP00000364321&upload_file=&peptide_sequence_constraint=&peptide_length=&empirical_proteotypic_constraint=&n_protein_mappings_constraint=&n_genome_locations_constraint=&n_highest_intensity_fragment_ions=3&n_peptides_per_protein=3&4H=1&5H=1&BA=1&C=0.95&D=1&DG=1&DP=1&Hper=1&M=0.95&NG=1&NxST=1&P=0.95&QG=1&R=1&S=1&W=1&Xc=1&max_l=25&max_p=0.2&min_l=7&min_p=0.2&nE=1&nGPG=1&nM=1&nQ=1&nX=1&nxxG=1&obs=2&ssr_p=0.5&set_current_work_group=&set_current_project_id=&QUERY_NAME=AT_GetPABSTList&apply_action_hidden=&action=QUERY;output_mode=tsv' -O foo.tsv 889 wget 'https://db.systemsbiology.net/devDC/sbeams/cgi/PeptideAtlas/GetTransitions?organism=human&protein_name_constraint=ENSP00000364321;n_highest_intensity_fragment_ions=3;n_peptides_per_protein=3;apply_action_hidden=&action=QUERY;output_mode=tsv' -O foo.tsv 890 wget 'https://db.systemsbiology.net/devDC/sbeams/cgi/PeptideAtlas/GetTransitions?organism=human&protein_name_constraint=ENSP00000364321;n_highest_intensity_fragment_ions=30;n_peptides_per_protein=30;apply_action_hidden=&action=QUERY;output_mode=tsv' -O foo.tsv 892 wget 'https://db.systemsbiology.net/devDC/sbeams/cgi/PeptideAtlas/GetTransitions?organism_name=human&protein_name_constraint=ENSP00000364321;n_highest_intensity_fragment_ions=30;n_peptides_per_protein=30;apply_action_hidden=&action=QUERY;output_mode=tsv' -O foo.tsv 1080 wget 'https://db.systemsbiology.net/devDC/sbeams/cgi/PeptideAtlas/GetTransitions?organism_name=human&protein_name_constraint=ENSP00000364321;n_highest_intensity_fragment_ions=30;n_peptides_per_protein=30;apply_action_hidden=&action=QUERY;output_mode=tsv' -O foo.tsv 1082 wget 'https://db.systemsbiology.net/devDC/sbeams/cgi/PeptideAtlas/GetTransitions?organism_name=human&protein_name_constraint=ENSP00000364321;n_highest_intensity_fragment_ions=30;n_peptides_per_protein=30;apply_action_hidden=&action=QUERY;output_mode=tsv' -O foo.tsv