TPP:4.1 Release Notes

From SPCTools

Revision as of 05:26, 9 November 2008; view current revision
←Older revision | Newer revision→
Jump to: navigation, search

TPP 4.1 Release Notes

To developers: Please add anything you want to be sent out here. I'll take out the author attribution in the actual announcement. We can keep this page (or something similar) on the Wiki, as well.

(from Luis:)

  • Added options to protxml2html to write out HTML or Excel (tab-delimited) from command line;
  • New file downloading tool, fileDownloader.pl, with (optional) md5 verification and unzip;
  • Added tar (to windows distro);
  • Apache defaults to 5-hour timeout;
  • In Petunia:
    • New page for management (download) of Spectral Libraries;
    • New page to generate Libra condition files - for up to 8 channels,(with updated isotopic correction factors);
    • Fixed bug when generating xtandem xml input file;
    • Option to pre-run generation of ProteinProphet results in html format;
    • Support for other mzXML converters: mzWiff, massWolf, and trapper (not all options yet);
    • Launch plot-msms when viewing spectra (instead of former dtaviewer);
    • Misc options for MzXML2Search.

(From Natalie)

  • Spectrum Viewer updated to automatically select appropriate ion series for display
  • add more here...

(From Brian)

  • TPP’s build of X!Tandem now reads mzML, mzXML3, and anything else that the PWIZ library can read.
  • ReadMZXML now reads mzML and anything else that the PWIZ library can read.
  • TPP GUI settings can now be changed by editing tpp_gui_config.pl so your changes to Mascot Server location etc don’t get blown away on each software update.
Retrieved from "http://tools.proteomecenter.org/wiki/index.php?title=TPP:4.1_Release_Notes"
Personal tools