Terry's compbio links

From SPCTools

Terry Farrah's Computational Biology Links

Peptide Atlas: a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments.

Terry's notes on how to perform a Peptide Atlas build

SBeams: SPC's experimental data storage system. Go here to run an SBeams test drive.

db.systemsbiology.org: Developer's back door into SBeams. Go here to contribute data.

db.systemsbiology.net/devTF/sbeams/cgi/main.cgi Terry's SBeams software development sandbox

www.python.org/doc: Helpful links for Python programmers.

Swiss-Prot curated protein sequence database

ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete: Download Swiss-Prot and other UniProt databases

Terry's blog on improving proteomics peptide and protein identifications